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Schema
Citing CMDGA
Clear Filters
Annotation type
13
gene expression
11
accessible chromatin
5
variant allelic effects
4
histone modifications
4
target gene predictions
3
candidate regulatory elements
2
chromatin state
1
binding sites
Annotation Category
5
Genetic variant effects
Annotation type Category
4
snATAC-seq
1
DNase-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
3
enterocyte
2
cardiac fibroblast
2
coronary artery
2
endothelial cell
2
epithelial cell of esophagus
2
goblet cell
2
hepatocyte
2
tibial artery
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
EndoC_BH1
1
Liver fetal (hepatocyte)
1
ascending aorta
1
bronchial goblet cell
1
choroid plexus epithelial cell
1
cortical cell of adrenal gland
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
granulosa cell
1
keratinocyte
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
luminal epithelial cell of prostatic duct
1
mammary gland epithelial cell
1
mesothelial cell
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
peptic cell
1
renal cortical epithelial cell
1
smooth muscle cell of the brain vasculature
1
thoracic aorta
1
thyroid follicular cell
1
type II pneumocyte
Organ
5
epithelium
3
intestine
2
liver
0
vasculature
Date released
4
February, 2024
1
May, 2020
Software used
5
deltasvm
Lab
4
Bing Ren, UCSD
1
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
organ_slims!
pericardium
Showing 5 of 5 results
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Download
FileSet
DSR972LVJ
released
Annotation file set
: Variant allelic effects annotation of Enterocytes (sub-type3) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR623GGP
released
Annotation file set
: Variant allelic effects annotation of Enterocytes (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR179RJC
released
Annotation file set
: Variant allelic effects annotation of Hepatocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR654PGN
released
Annotation file set
: Variant allelic effects annotation of Enterocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR488RFU
released
Annotation file set
: Genetic variants with deltaSVM predictions in liver hepatocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP