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Citing CMDGA
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Annotation type
9
accessible chromatin
6
target gene predictions
2
candidate regulatory elements
2
variant allelic effects
1
caQTL
1
eQTL
Annotation Category
2
Genetic variant effects
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
0
bigBed bed9
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
6
fibroblast
3
enterocyte
3
macrophage
3
myofibroblast cell
2
cardiac fibroblast
2
Schwann cell
2
T cell
2
basal cell
2
cardiac muscle cell
2
endothelial cell
2
epithelial cell of esophagus
2
goblet cell
2
hepatocyte
2
skeletal muscle fiber
2
smooth muscle cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
adipocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
bronchial goblet cell
1
choroid plexus epithelial cell
1
cortical cell of adrenal gland
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
granulosa cell
1
keratinocyte
1
kidney epithelial cell
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mast cell
1
mesothelial cell
1
naive t cell
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
peptic cell
1
renal cortical epithelial cell
1
skeletal muscle cell
1
smooth muscle cell of the brain vasculature
1
thyroid follicular cell
1
type II pneumocyte
Date released
2
February, 2024
Software used
2
deltasvm
Lab
2
Bing Ren, UCSD
Project
2
AMP
RFA
2
AMP
Showing 2 of 2 results
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Download
FileSet
DSR475VRW
released
Annotation file set
: Variant allelic effects annotation of Smooth muscle cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR798NUZ
released
Annotation file set
: Variant allelic effects annotation of Smooth muscle cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP