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Annotation type
49
accessible chromatin
42
differential activity
38
candidate regulatory elements
31
target gene predictions
13
gene expression
5
variant allelic effects
2
other
1
binding sites
1
chromatin state
Annotation Category
5
Genetic variant effects
Annotation type Category
4
snATAC-seq
1
SNP-SELEX
Available data
5
bed bed3+
4
bigBed narrowPeak
4
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic polypeptide-secreting cell
1
purified protein and synthetic DNA oligo binding assay
Organ
4
epithelium
4
pancreas
Life stage
4
adult
Date released
3
February, 2024
1
February, 2021
1
February, 2023
Software used
4
deltasvm
1
betacells_cytokines_t1d
Lab
83
AMP-T2D consortium
53
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
Project
4
AMP
1
T1D
Collection Tags
4
T2DKP
1
AMP
1
DGA
RFA
4
AMP
1
T1D
Showing 5 of 5 results
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FileSet
DSR976GBT
released
Annotation file set
: High-throughput analysis of the binding of human transcription factors to common sequence variants by SNP-SELEX (in-silico assay)
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR260PUK
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic gamma cell snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR964IEU
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic delta cell snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR450SMN
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic beta cell snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR884MOQ
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic alpha cell snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP