Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
Annotation type Category
4
snATAC-seq
ATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
5
bed bed3+
2
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
0
tissue
Biosample term
115
monocyte
89
heart
84
stomach
74
kidney
73
brain
68
lung
67
muscle of arm
62
small intestine
60
adrenal gland
59
placenta
57
muscle of leg
55
large intestine
54
muscle of back
53
common myeloid progenitor, CD34-positive
52
left lung
47
thymus
45
CD8-positive, alpha-beta T cell
45
right lung
43
liver
42
right kidney
41
B cell
40
renal cortex interstitium
40
renal pelvis
39
islet of Langerhans
37
endothelial cell
36
left kidney
32
CD4-positive, alpha-beta memory T cell
32
heart left ventricle
32
spleen
30
macrophage
30
spinal cord
29
fibroblast
28
adipose tissue
27
hepatocyte
26
regulatory T cell
23
body of pancreas
23
epithelial cell of proximal tubule
23
tibial nerve
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
caudate nucleus
22
natural killer cell
22
sigmoid colon
21
T-helper 1 cell
21
glomerular endothelial cell
20
mononuclear cell
20
ovary
20
pancreas
19
T-helper 17 cell
19
endothelial cell of umbilical vein
19
foreskin keratinocyte
19
heart right ventricle
19
psoas muscle
19
retina
18
substantia nigra
17
gastrocnemius medialis
17
pancreatic ductal cell
17
right atrium auricular region
17
testis
17
thyroid gland
17
transverse colon
17
trophoblast cell
16
CD14-positive monocyte
16
ascending aorta
16
cerebellum
16
chorionic villus
16
coronary artery
16
frontal cortex
16
layer of hippocampus
16
muscle of trunk
16
pancreatic alpha cell
16
pancreatic beta cell
16
skeletal muscle tissue
16
subcutaneous adipose tissue
16
tibial artery
16
upper lobe of left lung
15
T-helper 2 cell
15
endocrine pancreas
15
fibroblast of lung
15
foreskin fibroblast
15
neutrophil
15
omental fat pad
15
pancreatic delta cell
15
pericyte cell
15
skeletal muscle myoblast
15
smooth muscle cell
14
CD4-positive, alpha-beta T cell
14
Peyer's patch
14
keratinocyte
14
prostate gland
14
putamen
13
aorta
13
astrocyte
13
naive thymus-derived CD4-positive, alpha-beta T cell
13
neurosphere
13
osteoblast
13
pancreatic acinar cell
13
temporal lobe
12
Ammon's horn
12
bronchial epithelial cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
left cardiac atrium
12
left renal cortex interstitium
12
left renal pelvis
12
mammary epithelial cell
12
mammary gland epithelial cell
12
skeletal muscle satellite cell
11
esophagus muscularis mucosa
11
esophagus squamous epithelium
11
fibroblast of cardiac tissue
11
fibroblast of dermis
11
right renal pelvis
10
angular gyrus
10
breast epithelium
10
chorion membrane
10
colonic mucosa
10
dermis blood vessel endothelial cell
10
erythroblast
10
esophagus
10
glomerular visceral epithelial cell
10
hepatic stellate cell
10
kidney tubule cell
10
lower leg skin
10
pancreatic stellate cell
10
right renal cortex interstitium
10
trophoblast
9
cingulate gyrus
9
duodenal mucosa
9
eye
9
mature neutrophil
9
naive T cell
9
parathyroid adenoma
9
tongue
9
vagina
8
epithelial cell of prostate
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
globus pallidus
8
limb
8
mast cell
8
midbrain
8
mucosa of rectum
8
muscle layer of duodenum
8
myoepithelial cell of mammary gland
8
occipital lobe
8
retinal pigment epithelial cell
8
skeletal muscle fiber
8
thoracic aorta
7
CD1c-positive myeloid dendritic cell
7
adipocyte
7
amygdala
7
choroid plexus epithelial cell
7
gastroesophageal sphincter
7
hypothalamus
7
kidney epithelial cell
7
kidney glomerular epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
7
mesenchymal stem cell
7
muscle layer of colon
7
nucleus accumbens
7
renal cortical epithelial cell
7
right lobe of liver
7
skin fibroblast
7
stomach smooth muscle
6
Brodmann (1909) area 46
6
alternatively activated macrophage
6
anterior cingulate cortex
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
cardiac muscle cell
6
cerebellum (Hemisphere)
6
dermis lymphatic vessel endothelial cell
6
endothelial cell of lymphatic vessel
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
kidney interstitial cell
6
medulla oblongata
6
middle frontal gyrus
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
superior temporal gyrus
6
urinary bladder
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
Organ
6
musculature of body
Life stage
1
unknown
Date released
3
February, 2024
1
May, 2022
1
November, 2021
1
October, 2022
Software used
3
macs
1
deeptools
1
eigenmt
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
5
AMP
1
ENCODE
RFA
4
AMP2
1
AMP
1
ENCODE3
annotation_type_category!
ATAC-seq
assembly!
hg18
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR331TEA
released
Annotation file set
: Accessible chromatin from snATAC-seq of type II muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR940UYQ
released
Annotation file set
: Accessible chromatin annotation of Type II Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR273WHL
released
Annotation file set
: Chromatin site QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR829NMX
released
Annotation file set
: Expression QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR816KKF
released
Annotation file set
: Cell type chromatin broad peaks and bw of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR522PJU
released
Annotation file set
: Cell type gene expression mean TPM and bw of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP