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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
Annotation Category
1
cis-regulatory elements
Annotation type Category
ATAC-seq
1
snATAC-seq
Available data
1
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
43
hg19
1
GRCh38
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
87
monocyte
54
HeLa-S3
38
H1-hESC
23
heart
22
K562
21
brain
20
stomach
19
HFFc6
18
A549
18
fibroblast
18
kidney
18
macrophage
17
lung
17
muscle of arm
17
neural progenitor cell
16
muscle of leg
16
small intestine
15
adrenal gland
15
placenta
common myeloid progenitor, CD34-positive
13
endothelial cell
13
large intestine
13
left lung
13
muscle of back
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
hepatocyte
11
B cell
11
T cell
11
heart left ventricle
11
right kidney
11
right lung
11
thymus
10
hematopoietic multipotent progenitor cell
10
pericyte cell
10
renal cortex interstitium
10
renal pelvis
10
tibial nerve
9
CD4-positive, alpha-beta memory T cell
9
caudate nucleus
9
coronary artery
9
left kidney
9
tibial artery
8
ascending aorta
8
astrocyte
body of pancreas
8
cerebellum
8
frontal cortex
8
liver
8
putamen
8
right atrium auricular region
8
smooth muscle cell
8
spinal cord
8
substantia nigra
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
adipose tissue
7
left cardiac atrium
7
lymphocyte
7
omental fat pad
7
spleen
6
Ammon's horn
6
heart right ventricle
6
iPSC derived cell line
6
lymphoblastoid cell line
6
mononuclear cell
6
olfactory receptor cell
5
HepG2
5
MCF-7
5
amygdala
5
anterior cingulate cortex
5
endothelial cell of umbilical vein
5
erythroblast
5
fibroblast of cardiac tissue
5
hypothalamus
5
inhibitory neuron
5
nucleus accumbens
5
ovary
5
pancreas
5
regulatory T cell
5
retina
5
right lobe of liver
5
sigmoid colon
5
skeletal muscle satellite cell
5
subcutaneous adipose tissue
5
thyroid gland
5
transverse colon
5
trophoblast cell
4
C1 segment of cervical spinal cord
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
angular gyrus
4
aorta
4
cerebellum (Hemisphere)
4
chorionic villus
4
colon epithelial cell
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
foreskin keratinocyte
4
gastrocnemius medialis
4
gastrocnemius medialis(Muscle - Skeletal)
4
islet of Langerhans
4
keratinocyte
4
layer of hippocampus
4
left ventricle myocardium
4
mammary gland epithelial cell
4
muscle of trunk
4
natural killer cell
4
pancreatic acinar cell
4
pancreatic ductal cell
4
psoas muscle
4
skin of body
4
temporal lobe
4
testis
3
cardiac fibroblast
3
HCT116
3
Peyer's patch
3
adipocyte
3
blood cell
3
chorion membrane
3
cortical cell of adrenal gland
3
endometrium adenocarcinoma
3
enterocyte
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of dermis
3
fibroblast of lung
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
left renal cortex interstitium
3
left renal pelvis
3
luminal epithelial cell of mammary gland
3
mesenchymal stem cell
3
naive T cell
3
neurosphere
3
neutrophil
3
prostate gland
3
retinal pigment epithelial cell
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle fiber
3
skeletal muscle tissue
3
skin fibroblast
3
thoracic aorta
3
type II pneumocyte
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Brodmann (1909) area 46
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
LNCaP clone FGC
2
Muller cell
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
blood vessel smooth muscle cell
2
brain microvascular endothelial cell
2
breast epithelium
2
bronchial epithelial cell
2
cardiac muscle cell
2
cerebellar cortex
2
choroid plexus epithelial cell
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endocardial cell
2
endodermal cell
2
endothelial cell of lymphatic vessel
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
esophagus squamous epithelium
2
eye
2
fetal cardiomyocyte
2
fibroblast of breast
2
fibroblast of the aortic adventitia
2
foreskin fibroblast
2
gabaergic neuron
2
germinal matrix
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
glutamatergic neuron
2
kidney capillary endothelial cell
Date released
1
November, 2021
Software used
1
macs
Lab
1
Bing Ren, UCSD
Project
1
ENCODE
RFA
1
ENCODE3
annotation_type_category!
ATAC-seq
biosample_term_name!
body of pancreas
common myeloid progenitor, CD34-positive
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE