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Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
histone modifications
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
ATAC-seq
2
ChIP-seq
1
HiC
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
96
monocyte
84
heart
82
stomach
brain
66
kidney
66
lung
66
muscle of arm
63
HeLa-S3
61
A549
61
small intestine
58
adrenal gland
58
placenta
57
muscle of leg
55
large intestine
54
muscle of back
53
common myeloid progenitor, CD34-positive
52
left lung
47
thymus
45
H1-hESC
45
right lung
43
CD8-positive, alpha-beta T cell
42
hematopoietic multipotent progenitor cell
41
right kidney
40
K562
40
liver
39
B cell
39
renal cortex interstitium
39
renal pelvis
36
left kidney
33
neural progenitor cell
33
spinal cord
32
CD4-positive, alpha-beta memory T cell
30
spleen
29
heart left ventricle
25
MCF-7
24
adipose tissue
22
CD8-positive, alpha-beta memory T cell
22
endothelial cell
22
foreskin keratinocyte
22
sigmoid colon
20
body of pancreas
20
breast cancer cell
20
fibroblast
20
mononuclear cell
20
trophoblast cell
19
T cell
19
caudate nucleus
19
islet of Langerhans
19
psoas muscle
19
tibial nerve
18
HFFc6
18
foreskin fibroblast
18
mesenchymal stem cell
18
natural killer cell
17
adipocyte
17
endothelial cell of umbilical vein
17
gastrocnemius medialis
17
heart right ventricle
17
keratinocyte
17
macrophage
17
ovary
17
pancreas
16
CD14-positive monocyte
16
chorionic villus
16
muscle of trunk
16
regulatory T cell
16
thyroid gland
16
transverse colon
16
upper lobe of left lung
15
GM12878
15
H9
15
fibroblast of cardiac tissue
15
fibroblast of lung
15
layer of hippocampus
15
retina
15
skeletal muscle tissue
15
substantia nigra
15
testis
14
CD4-positive, alpha-beta T cell
14
endocrine pancreas
14
hepatocyte
14
neutrophil
14
smooth muscle cell
14
tibial artery
13
HepG2
13
Peyer's patch
13
ascending aorta
13
bronchial epithelial cell
13
coronary artery
13
mammary gland epithelial cell
13
neurosphere
13
omental fat pad
13
pericyte cell
13
skeletal muscle myoblast
12
aorta
12
cardiac muscle cell
12
cerebellum
12
neuroblastoma cell
12
osteoblast
12
prostate gland
12
right atrium auricular region
11
Ammon's horn
11
T-helper 1 cell
11
T-helper 17 cell
11
excitatory neuron
11
fibroblast of dermis
11
left renal cortex interstitium
11
mammary epithelial cell
11
putamen
11
skeletal muscle satellite cell
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
T-helper 2 cell
10
astrocyte
10
breast epithelium
10
epithelial cell of prostate
10
esophagus squamous epithelium
10
gastric cancer cell
10
lymphocyte
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
pancreatic ductal cell
10
right renal pelvis
10
subcutaneous adipose tissue
10
trophoblast
9
HEK293
9
SK-N-DZ
9
choroid plexus epithelial cell
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
erythroblast
9
frontal cortex
9
kidney tubule cell
9
left cardiac atrium
9
left renal pelvis
9
liposarcoma
9
neuronal stem cell
9
parathyroid adenoma
9
right renal cortex interstitium
9
tongue
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
NAMALWA cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
embryonic stem cell
8
endodermal cell
8
esophagus
8
esophagus muscularis mucosa
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pancreatic beta cell
8
retinal pigment epithelial cell
8
skin fibroblast
8
thoracic aorta
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19239
7
GM19240
7
HT-29
7
IMR-90
7
SK-N-MC
7
SK-N-SH
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
endothelial cell of hepatic sinusoid
7
esophageal adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
hepatic stellate cell
7
mature neutrophil
7
mesendoderm
7
pancreatic alpha cell
7
right lobe of liver
7
stomach smooth muscle
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM08714
Organ
1
epithelium
1
pancreas
Date released
2
February, 2021
1
March, 2020
Software used
2
macs
1
hiccups
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type_category!
ATAC-seq
biosample_term_name!
brain
software_used.software.name!
deltasvm
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR257RKK
released
Annotation file set
: Histone modifications annotation for Pancreas EndoC-BH1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170VOW
released
Annotation file set
: Binding sites annotation for Pancreas EndoC-BH1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR373FUA
released
Annotation file set
: A target gene prediction annotation in EndoC_BH1 of DSR433ZII Hi-C
Lab:
AMP-T2D consortium
Project:
AMP