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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
Target gene links
1
cis-regulatory elements
Annotation type Category
3
snATAC-seq
ATAC-seq
Available data
3
bed bed3+
3
bigBed narrowPeak
3
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
88
monocyte
57
A549
40
common myeloid progenitor, CD34-positive
35
hematopoietic multipotent progenitor cell
24
adrenal gland
23
B cell
22
liver
21
adipose tissue
21
stomach
20
body of pancreas
19
K562
19
MCF-7
19
spleen
19
tibial nerve
18
CD8-positive, alpha-beta T cell
16
caudate nucleus
16
gastrocnemius medialis
16
sigmoid colon
16
thyroid gland
16
transverse colon
15
CD8-positive, alpha-beta memory T cell
15
mononuclear cell
14
ascending aorta
14
omental fat pad
13
Peyer's patch
13
coronary artery
13
pancreas
13
substantia nigra
13
tibial artery
13
upper lobe of left lung
12
CD14-positive monocyte
12
cerebellum
12
endocrine pancreas
12
heart left ventricle
12
layer of hippocampus
12
natural killer cell
12
ovary
12
psoas muscle
12
right atrium auricular region
11
HeLa-S3
11
aorta
11
frontal cortex
11
temporal lobe
10
T cell
10
angular gyrus
10
esophagus squamous epithelium
10
lower leg skin
9
Ammon's horn
9
CD4-positive, alpha-beta memory T cell
9
breast epithelium
9
endometrium adenocarcinoma
9
esophagus muscularis mucosa
9
immortal human breast epithelial cell line cell
9
kidney
9
parathyroid adenoma
9
putamen
9
skeletal muscle tissue
9
subcutaneous adipose tissue
9
thoracic aorta
8
CD4-positive, alpha-beta T cell
8
T-helper 1 cell
8
cingulate gyrus
8
colonic mucosa
8
duodenal mucosa
8
esophagus
8
fibroblast of breast
8
kidney tubule cell
8
mucosa of rectum
8
muscle layer of colon
8
muscle layer of duodenum
8
myoepithelial cell of mammary gland
8
prostate gland
8
right lobe of liver
8
small intestine
8
stomach smooth muscle
8
testis
8
vagina
7
LNCaP clone FGC
7
T-helper 2 cell
7
T47D
7
gastroesophageal sphincter
7
regulatory T cell
6
Brodmann (1909) area 46
6
endothelial cell of hepatic sinusoid
6
islet of Langerhans
6
mammary gland epithelial cell
6
muscle cell
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
right cardiac atrium
5
GM12878
5
cerebellar cortex
5
dermis blood vessel endothelial cell
5
fibroblast of lung
5
globus pallidus
5
heart right ventricle
5
lung
5
mature neutrophil
5
mesenchymal stem cell
5
middle frontal gyrus
5
neutrophil
5
skeletal muscle satellite cell
5
subcutaneous abdominal adipose tissue
5
uterus
4
A172
4
ACC112
4
ACHN
4
C1 segment of cervical spinal cord
4
C4-2B
4
Caki2
4
DOHH2
4
GM04503
4
GM04504
4
GM23248
4
GM23338
4
H4
4
H54
4
HAP-1
4
HCT116
4
HL-60
4
HS-27A
4
HS-5
4
HT-29
4
HT1080
4
KBM-7
4
KMS-11
4
LHCN-M2
4
Loucy
4
M059J
4
MM.1S
4
NB4
4
NCI-H929
4
OCI-LY1
4
OCI-LY3
4
OCI-LY7
4
PC-3
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
RWPE2
4
SJSA1
4
SK-MEL-5
4
SU-DHL-6
4
SW480
4
adipocyte
4
amygdala
4
anterior cingulate cortex
4
bipolar neuron
4
cartilage tissue
4
cerebellum (Hemisphere)
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
fibroblast of dermis
4
gastrocnemius medialis(Muscle - Skeletal)
4
heart
4
hepatic stellate cell
4
hypothalamus
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
4
kidney glomerular epithelial cell
4
left ventricle myocardium
4
medulla oblongata
4
midbrain
4
mucosa of stomach
4
nucleus accumbens
4
occipital lobe
4
peripheral blood mononuclear cell
4
pons
4
skeletal muscle myoblast
4
superior temporal gyrus
4
urinary bladder
3
8988T
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
COLO829
3
Caco-2 cell
3
GM10248
3
GM10266
3
GM12875
3
GM19238
3
GM19239
3
GM19240
3
HPDE6-E6E7
3
HuH-7
3
HuH-7.5
3
KARPAS-422 cell
3
LoVo cell
3
MCF 10A
3
NCI-H226 cell
3
VCaP cell
3
fibroblast of cardiac tissue
3
iPS-NIHi11
3
iPS-NIHi7
Organ
3
epithelium
3
pancreas
Life stage
3
adult
1
unknown
Date released
2
February, 2024
1
February, 2021
Software used
1
cicero
1
deltasvm
1
macs
Lab
3
Kyle Gaulton, UCSD
Project
3
AMP
RFA
3
AMP
annotation_type_category!
ATAC-seq
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR376KYK
released
Annotation file set
: pancreatic beta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR450SMN
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic beta cell snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR373LDZ
released
Annotation file set
: pancreatic beta cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP