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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
4
DNase-seq
2
ChIP-seq
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
4
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
stem cell
Biosample term
91
monocyte
58
HeLa-S3
45
heart
42
H1-hESC
41
stomach
38
A549
35
CD8-positive, alpha-beta T cell
35
brain
34
muscle of arm
33
kidney
33
lung
32
small intestine
31
K562
30
adrenal gland
29
placenta
28
muscle of leg
27
large intestine
26
common myeloid progenitor, CD34-positive
26
left lung
26
muscle of back
25
thymus
24
B cell
23
fibroblast
23
right lung
22
neural progenitor cell
21
endothelial cell
21
hematopoietic multipotent progenitor cell
21
renal pelvis
21
right kidney
20
renal cortex interstitium
19
HFFc6
19
macrophage
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
liver
17
T cell
17
spinal cord
15
heart left ventricle
15
smooth muscle cell
14
CD8-positive, alpha-beta memory T cell
14
adipose tissue
14
spleen
12
MCF-7
12
adipocyte
12
excitatory neuron
12
hepatocyte
12
mononuclear cell
12
pancreas
12
pericyte cell
12
psoas muscle
12
sigmoid colon
11
GM12878
11
HepG2
11
trophoblast cell
10
fibroblast of cardiac tissue
10
heart right ventricle
10
mesenchymal stem cell
10
natural killer cell
10
ovary
10
regulatory T cell
9
astrocyte
9
body of pancreas
9
caudate nucleus
9
endothelial cell of umbilical vein
9
fibroblast of lung
9
foreskin keratinocyte
9
gastrocnemius medialis
9
islet of Langerhans
9
left cardiac atrium
9
mammary gland epithelial cell
9
pancreatic beta cell
9
pancreatic delta cell
9
retina
9
thyroid gland
9
tibial nerve
9
transverse colon
8
CD14-positive monocyte
8
H9
8
chorionic villus
8
endocrine pancreas
8
endothelial cell of hepatic sinusoid
8
erythroblast
8
keratinocyte
8
lymphocyte
8
muscle of trunk
8
pancreatic alpha cell
8
pancreatic ductal cell
7
Peyer's patch
7
T-helper 1 cell
7
chorion membrane
7
fibroblast of dermis
7
foreskin fibroblast
7
frontal cortex
7
layer of hippocampus
7
neutrophil
7
pancreatic acinar cell
7
skeletal muscle myoblast
7
skeletal muscle satellite cell
7
tibial artery
7
upper lobe of left lung
6
T-helper 17 cell
6
T-helper 2 cell
6
aorta
6
ascending aorta
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
coronary artery
6
endometrium adenocarcinoma
6
enterocyte
6
immortal human breast epithelial cell line cell
6
kidney tubule cell
6
left renal pelvis
6
naive T cell
6
neurosphere
6
olfactory receptor cell
6
osteoblast
6
right atrium auricular region
6
right renal pelvis
6
skeletal muscle fiber
6
skeletal muscle tissue
6
skin fibroblast
6
testis
6
trophoblast
5
cardiac fibroblast
5
Ammon's horn
5
GM19240
5
HUES8
5
NAMALWA cell
5
SK-N-DZ
5
SK-N-SH
5
breast epithelium
5
bronchial epithelial cell
5
cerebellum
5
cingulate gyrus
5
colon epithelial cell
5
colonic mucosa
5
duodenal mucosa
5
epithelial cell of prostate
5
epithelial cell of proximal tubule
5
esophagus
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
eye
5
glomerular visceral epithelial cell
5
hepatic stellate cell
5
inhibitory neuron
5
left renal cortex interstitium
5
limb
5
mucosa of rectum
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
occipital lobe
5
omental fat pad
5
pancreatic stellate cell
5
prostate gland
5
retinal pigment epithelial cell
5
right renal cortex interstitium
5
temporal lobe
5
type I muscle cell
5
type II muscle cell
5
urinary bladder
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
Brodmann (1909) area 46
4
Caco-2 cell
4
CyT49
4
GM06990
4
GM12864
4
GM12865
4
GM18507
4
GM19238
4
GM19239
4
HCT116
4
HEK293
4
HL-60
4
IMR-90
4
LNCaP clone FGC
4
NT2-D1 cell
4
SK-N-MC
4
T47D
4
WERI-Rb-1
4
angular gyrus
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
basal cell
4
cortical cell of adrenal gland
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
endodermal cell
4
epithelial cell of esophagus
4
fibroblast of breast
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of villous mesenchyme
4
globus pallidus
Life stage
2
embryonic
Date released
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
Software used
2
r
1
macs
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type_category!
ATAC-seq
files.file_type!
tsv
month_released!
February, 2021
Showing 4 of 4 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP