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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
snATAC-seq
ATAC-seq
Available data
3
bed bed3+
3
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
115
monocyte
53
common myeloid progenitor, CD34-positive
45
CD8-positive, alpha-beta T cell
37
B cell
32
CD4-positive, alpha-beta memory T cell
32
endothelial cell
27
macrophage
26
hepatocyte
26
regulatory T cell
25
fibroblast
23
epithelial cell of proximal tubule
22
CD8-positive, alpha-beta memory T cell
22
T cell
21
T-helper 1 cell
21
glomerular endothelial cell
20
mononuclear cell
19
T-helper 17 cell
19
endothelial cell of umbilical vein
19
foreskin keratinocyte
19
natural killer cell
17
trophoblast cell
16
CD14-positive monocyte
16
pancreatic alpha cell
16
pancreatic beta cell
16
pancreatic ductal cell
16
skeletal muscle myoblast
15
T-helper 2 cell
15
fibroblast of lung
15
foreskin fibroblast
15
neutrophil
15
pancreatic delta cell
14
CD4-positive, alpha-beta T cell
14
keratinocyte
14
naive thymus-derived CD4-positive, alpha-beta T cell
14
osteoblast
14
smooth muscle cell
13
astrocyte
13
neurosphere
13
pancreatic acinar cell
13
pericyte cell
12
bronchial epithelial cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
mammary epithelial cell
12
mammary gland epithelial cell
12
skeletal muscle satellite cell
11
fibroblast of cardiac tissue
11
fibroblast of dermis
10
dermis blood vessel endothelial cell
10
erythroblast
10
glomerular visceral epithelial cell
10
kidney tubule cell
10
retinal pigment epithelial cell
9
hepatic stellate cell
9
mature neutrophil
9
naive T cell
9
skeletal muscle fiber
8
epithelial cell of prostate
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
myoepithelial cell of mammary gland
8
pancreatic stellate cell
8
renal cortical epithelial cell
8
skin fibroblast
7
CD1c-positive myeloid dendritic cell
7
choroid plexus epithelial cell
7
kidney epithelial cell
7
kidney glomerular epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
7
mesenchymal stem cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
pulmonary artery endothelial cell
6
alternatively activated macrophage
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
cardiac muscle cell
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
kidney interstitial cell
6
memory B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
peripheral blood mononuclear cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
brain microvascular endothelial cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
inflammatory macrophage
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
luminal epithelial cell of mammary gland
5
lung microvascular endothelial cell
5
mast cell
5
myofibroblast cell
5
non-pigmented ciliary epithelial cell
5
pancreatic endothelial cell
5
tracheal epithelial cell
5
type II pneumocyte
4
T-cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adipocyte
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
astrocyte of the spinal cord
4
basal cell
4
cardiac fibroblast
4
cortical cell of adrenal gland
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
megakaryocyte
4
naive B cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
plasma cell
4
renal epithelial cell
4
stromal cell of bone marrow
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
S-shaped body
3
Schwann cell
Organ
3
epithelium
3
lung
Date released
2
November, 2021
1
April, 2020
Software used
2
macs
Lab
2
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
2
ENCODE
1
LungMap
RFA
2
ENCODE3
1
LungMap2
annotation_type_category!
ATAC-seq
biosample_term_name!
Regulatory T Cell
plasma cell
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR664CZE
released
Annotation file set
: ATAC-seq peaks in AT1 cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR767ZHU
released
Annotation file set
: Accessible chromatin annotation of Fetal Broncial and Alveolar Epithelial Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR436AKV
released
Annotation file set
: Accessible chromatin annotation of Alveolar Type 1 (AT1) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE