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Citing CMDGA
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Annotation type
3
meQTL
1
eQTL
Annotation Category
4
Genetic variant effects
Annotation type Category
3
DNA methylation profiling by array assay
1
RNA-seq
Available data
3
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
tissue
Biosample term
1
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
1
subcutaneous adipose tissue
Organ
1
adipose tissue
1
connective tissue
Life stage
4
adult
Date released
3
May, 2021
1
August, 2021
Software used
2386
r
2361
macs
1035
chromhmm
808
encode-ccres
119
deltasvm
116
deseq2
116
qTLtools
32
cicero
27
chicago
27
nospecificsoft_customcode
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
15
limix
14
hiccups
12
deeptools
12
matrix-eQTL
12
samtools
12
umitools
9
rasqual
9
salmon
8
fastqtl
5
eigenmt
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
probabel
1
snap
1
spp
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type_category!
ATAC-seq
relevant_life_stage!
postnatal
Showing 4 of 4 results
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Download
FileSet
DSR135HUG
released
Annotation file set
: methylation quantitative trait loci (meQTLs) from DAN methylation of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 132 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR197ERC
released
Annotation file set
: methylation quantitative trait loci (meQTLs) from DAN methylation of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR301CXZ
released
Annotation file set
: methylation quantitative trait loci (meQTLs) from DAN methylation of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 196 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR669QFK
released
Annotation file set
: eQTLs from RNA microarray samples from 770 males who are part of the METSIM study of subcutaneous adipose tissue for GSE70353
Lab:
AMP-T2D consortium
Project:
AMP