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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
ChIP-seq
DNase-seq
1
pCHi-C
1
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
1
primary cell
1
stem cell
Biosample term
51
HeLa-S3
45
H1-hESC
37
islet of Langerhans
37
monocyte
23
retina
20
pigmented layer of retina
19
EndoC_BH1
19
HFFc6
18
neural progenitor cell
16
K562
16
subcutaneous adipose tissue
15
epithelial cell of proximal tubule
13
glomerular endothelial cell
13
liver
11
adipose tissue
11
cardiomyocytes
11
regulatory T cell
10
T-helper 1 cell
10
coronary artery
10
macrophage
9
T-helper 17 cell
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
9
right atrium auricular region
tibial nerve
8
cardiomyocytes (cardiac muscle cell)
8
endothelial cell
8
hepatocyte
8
omental fat pad
8
tibial artery
7
cerebellum
7
embryonic stem cell
7
frontal cortex
7
kidney loop of Henle thin ascending limb epithelial cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
putamen
7
substantia nigra
6
Ammon's horn
6
GM12878
6
H9
6
T-helper 2 cell
6
amygdala
6
anterior cingulate cortex
6
body of pancreas
6
cardiac precursors (cardiac muscle cell)
6
caudate nucleus
6
gamma-delta T cell
6
heart left ventricle
6
hypothalamus
6
iPSC derived cell line
6
kidney interstitial cell
6
lymphoblastoid cell line
6
lymphocyte
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
nucleus accumbens
6
olfactory receptor cell
6
pancreatic ductal cell
6
retinal pigment epithelial cell
5
B cell
5
C1 segment of cervical spinal cord
5
CD8-positive, alpha-beta T cell
5
SGBS preadipocytes
5
T follicular helper cell
5
ascending aorta
5
central memory CD8-positive, alpha-beta T cell
5
cerebellum (Hemisphere)
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
gastrocnemius medialis(Muscle - Skeletal)
5
glomerular visceral epithelial cell
5
heart
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
memory B cell
5
mesangial cell
5
neutrophil
5
pancreatic beta cell
5
right lobe of liver
4
CyT49
4
HUES8
4
adipocyte
4
adult endothelial progenitor cell
4
bone tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
glutamatergic neuron
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
osteoblast
4
pancreas
4
pancreatic alpha cell
4
smooth muscle cell of the coronary artery
4
spleen
4
visceral abdominal adipose tissue
3
Pancreatic progenitors (progenitor cell of endocrine pancreas)
3
S-shaped body
3
adrenal gland
3
aorta
3
blood cell
3
brain
3
dorsolateral prefrontal cortex
3
heart right ventricle
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney distal convoluted tubule epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
lung
3
naive B cel
3
naive regulatory T cell
3
natural killer cell
3
ovary
3
pancreatic acinar cell
3
pancreatic delta cell
3
psoas muscle
3
skeletal muscle tissue
3
skin of body
2
CD4-positive, alpha-beta T cell
2
HCT116
2
HepG2
2
Kupffer cell
2
MIN6
2
T cell
2
activated CD4-positive, alpha-beta T cell
2
adipose-derived stem cell
2
aortic endothelial cell
2
astrocyte
2
blood
2
differentiating adipose-derived stem cell
2
esophagus
2
excitatory neuron
2
fibroblast
2
hippocampal neuron
2
kidney glomerular epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
leukocyte
2
lower motor neuron
2
lymphocyte of B lineage (iPSC)
2
mesenchymal stem cell
2
minor salivary gland
2
muscle
2
myeloid dendritic cell
2
pancreatic polypeptide-secreting cell
2
plasma cell
2
renal vesicle
2
right cardiac atrium
2
skeletal muscle satellite cell
2
small intestine
2
smooth muscle cell
2
stomach
2
testis
2
thoracic aorta
2
thymus
2
tissue
2
uterus
2
vagina
2
vascular associated smooth muscle cell
1
Adipose SGBS cell line (adipocyte)
1
B-1a B cell
1
B-lymphoblastoid cell line
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Preadipose SGBS cell line (adipocyte)
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
Schwann cell
1
abdominal aorta artery
1
activated CD8-positive, alpha-beta T cell
1
activated pancreatic stellate cell
1
alpha-beta T cell
1
alternatively activated macrophage
1
aorta wall
1
aortic valve
1
bladder
Organ
2
connective tissue
Life stage
1
unknown
Date released
1
March, 2020
1
May, 2022
Software used
1
macs
1
nospecificsoft_customcode
Lab
4
Stephen Parker, UMich
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type_category!
ChIP-seq
DNase-seq
biosample_term_name!
tibial nerve
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP