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Schema
Citing CMDGA
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Annotation type
1
variant allelic effects
Annotation Category
1
Genetic variant effects
Annotation type Category
4
DNase-seq
ChIP-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
2
hg19
GRCh38
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
23
monocyte
17
epithelial cell of proximal tubule
16
endothelial cell
16
glomerular endothelial cell
15
CD14-positive monocyte
12
hepatocyte
11
regulatory T cell
10
T-helper 1 cell
10
pancreatic alpha cell
10
pancreatic beta cell
10
pancreatic delta cell
10
pancreatic ductal cell
9
T-helper 17 cell
9
pancreatic acinar cell
8
CD8-positive, alpha-beta T cell
7
B cell
7
glomerular visceral epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
macrophage
7
smooth muscle cell
6
fibroblast
6
gamma-delta T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
pancreatic stellate cell
6
skeletal muscle fiber
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T-helper 2 cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
memory B cell
5
mesangial cell
5
mesenchymal stem cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
natural killer cell
5
osteoblast
5
pancreatic endothelial cell
5
type I muscle cell
5
type II muscle cell
4
T follicular helper cell
4
adult endothelial progenitor cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of umbilical vein
4
glutamatergic neuron
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
myofibroblast cell
4
naive B cell
4
nephron progenitor
4
neutrophil
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
skeletal muscle myoblast
4
skeletal muscle satellite cell
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
T cell
3
adipocyte
3
basal cell
3
cardiac muscle cell
3
enterocyte
3
hepatic stellate cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
naive regulatory T cell
3
pancreatic quiescent stellate cell
3
renal cortical epithelial cell
2
cardiac fibroblast
2
CD4-positive helper T cell
2
CD4-positive, alpha-beta T cell
2
Kupffer cell
2
T-cell
2
acute myeloid leukemia cell
2
alternatively activated macrophage
2
aortic endothelial cell
2
articular chondrocyte
2
astrocyte
2
bone marrow cell
2
capillary endothelial cell
2
epithelial cell of esophagus
2
erythroblast
2
extracellular matrix secreting cell
2
foreskin fibroblast
2
glial cell
2
goblet cell
2
inflammatory macrophage
2
keratinocyte
2
kidney epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
kidney tubule cell
2
mammary epithelial cell
2
mast cell
2
myeloid dendritic cell
2
naive B cel
2
neural cell
2
plasma cell
2
renal principal cell
2
renal vesicle
2
smooth muscle cell of the coronary artery
2
trophoblast cell
2
type II pneumocyte
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-lymphocyte
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Ishikawa
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
activated CD4-positive, alpha-beta T cell
1
activated pancreatic stellate cell
1
alpha-beta T cell
1
aortic adventitial fibroblast
1
astrocyte of the cerebellum
Organ
1
musculature of body
Date released
1
May, 2020
Software used
1
deltasvm
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
annotation_type_category!
ChIP-seq
assembly!
GRCh38
award.project!
T1D
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR592EHG
released
Annotation file set
: Genetic variants with deltaSVM predictions in skeletal muscle cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP