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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
ChIP-seq
30
DNase-seq
2
ATAC-seq
2
H3K27ac ChIP-Seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
2
cell line
2
tissue
Biosample term
52
HeLa-S3
47
H1-hESC
40
monocyte
38
islet of Langerhans
26
retina
23
hepatocyte
20
endothelial cell
20
pigmented layer of retina
19
EndoC_BH1
19
HFFc6
19
kidney
18
K562
18
epithelial cell of proximal tubule
18
neural progenitor cell
18
subcutaneous adipose tissue
17
glomerular endothelial cell
liver
17
macrophage
16
pancreatic ductal cell
15
CD14-positive monocyte
13
coronary artery
13
regulatory T cell
12
adipocyte
12
adipose tissue
12
pancreatic beta cell
12
right atrium auricular region
12
tibial nerve
11
T-helper 1 cell
11
cardiomyocytes
11
heart
11
pancreatic acinar cell
11
pancreatic alpha cell
11
tibial artery
10
T-helper 17 cell
10
fibroblast
10
frontal cortex
10
induced pluripotent stem cell
10
pancreas
10
pancreatic delta cell
10
pituitary stalk
10
putamen
9
CD8-positive, alpha-beta T cell
9
caudate nucleus
9
extended pluripotent stem (EPS) cells
9
glomerular visceral epithelial cell
9
heart left ventricle
9
omental fat pad
9
progenitor cell of endocrine pancreas
9
smooth muscle cell
8
Ammon's horn
8
B cell
8
GM12878
8
body of pancreas
8
cardiomyocytes (cardiac muscle cell)
8
cerebellum
8
embryonic stem cell
8
endothelial cell of hepatic sinusoid
8
mesenchymal stem cell
8
osteoblast
8
pancreatic stellate cell
8
retinal pigment epithelial cell
7
H9
7
ascending aorta
7
dendritic cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphoblastoid cell line
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
stomach
7
substantia nigra
6
SGBS preadipocytes
6
T cell
6
T-helper 2 cell
6
adrenal gland
6
amygdala
6
anterior cingulate cortex
6
brain
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
gamma-delta T cell
6
hypothalamus
6
iPSC derived cell line
6
lymphocyte
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
natural killer cell
6
nucleus accumbens
6
olfactory receptor cell
6
skeletal muscle fiber
6
spleen
5
cardiac fibroblast
5
C1 segment of cervical spinal cord
5
HUES8
5
T follicular helper cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
endothelial cell of umbilical vein
5
gastrocnemius medialis(Muscle - Skeletal)
5
heart right ventricle
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
memory B cell
5
mesangial cell
5
neutrophil
5
ovary
5
pancreatic endothelial cell
5
psoas muscle
5
right lobe of liver
5
skeletal muscle myoblast
5
smooth muscle cell of the coronary artery
5
type I muscle cell
5
type II muscle cell
4
CyT49
4
HepG2
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Schwann cell
4
adult endothelial progenitor cell
4
bone tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
glutamatergic neuron
4
hepatic stellate cell
4
kidney connecting tubule epithelial cell
4
kidney glomerular epithelial cell
4
leukocyte
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
occipital lobe
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
renal cortical epithelial cell
4
skeletal muscle satellite cell
4
small intestine
4
spinal cord
4
thymus
4
uterus
4
vascular associated smooth muscle cell
4
visceral abdominal adipose tissue
3
CD4-positive helper T cell
3
Jurkat
3
S-shaped body
3
U937
3
aorta
3
astrocyte
3
blood cell
3
brain pericyte
3
choroid plexus epithelial cell
3
dorsolateral prefrontal cortex
3
enterocyte
3
globus pallidus
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
left cardiac atrium
3
lung
3
medulla oblongata
3
mesendoderm
3
midbrain
3
muscle of leg
3
myofibroblast cell
3
naive B cel
3
naive regulatory T cell
3
pancreatic quiescent stellate cell
3
placenta
3
pons
3
renal pelvis
3
sigmoid colon
3
skeletal muscle tissue
3
skin of body
3
superior temporal gyrus
3
testis
3
thyroid gland
3
transverse colon
3
trophoblast cell
2
hindlimb muscle
2
muscle of leg
2
A549
2
BJAB cell
2
CD4-positive, alpha-beta T cell
2
GM18507
2
GM19240
2
H7-hESC
Organ
2
limb
2
mammary gland
2
musculature of body
Date released
2
June, 2020
2
May, 2021
Software used
2
abc
2
macs
Lab
2
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
annotation_type_category!
ChIP-seq
biosample_term_name!
liver
Showing 4 of 4 results
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Download
FileSet
DSR249DLQ
released
Annotation file set
: enhancer-gene predicton of MCF-7-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR734DGW
released
Annotation file set
: enhancer-gene predicton of gastrocnemius_medialis-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR889VCH
released
Annotation file set
: Accessible chromatin annotation for Muscle Gastrocnemius medialis from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645VUL
released
Annotation file set
: Accessible chromatin annotation for Breast MCF-7 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP