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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
ChIP-seq
9
DNase-seq
1
pCHi-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
in vitro differentiated cells
Biosample term
52
HeLa-S3
40
monocyte
39
H1-hESC
30
islet of Langerhans
26
retina
23
hepatocyte
20
pigmented layer of retina
19
EndoC_BH1
19
HFFc6
18
K562
17
epithelial cell of proximal tubule
16
endothelial cell
16
glomerular endothelial cell
16
macrophage
16
pancreatic ductal cell
15
CD14-positive monocyte
15
subcutaneous adipose tissue
13
coronary artery
13
regulatory T cell
12
adipocyte
12
pancreatic beta cell
12
right atrium auricular region
12
tibial nerve
11
T-helper 1 cell
11
cardiomyocytes
11
kidney
11
liver
pancreatic acinar cell
11
pancreatic alpha cell
11
tibial artery
10
adipose tissue
10
fibroblast
10
frontal cortex
10
heart
10
induced pluripotent stem cell
10
pancreas
10
pancreatic delta cell
10
pituitary stalk
10
putamen
9
T-helper 17 cell
9
caudate nucleus
9
extended pluripotent stem (EPS) cells
9
heart left ventricle
9
progenitor cell of endocrine pancreas
9
smooth muscle cell
8
Ammon's horn
8
B cell
8
CD8-positive, alpha-beta T cell
8
GM12878
8
body of pancreas
8
cardiomyocytes (cardiac muscle cell)
8
cerebellum
8
embryonic stem cell
8
endothelial cell of hepatic sinusoid
8
glomerular visceral epithelial cell
8
mesenchymal stem cell
8
omental fat pad
8
osteoblast
8
pancreatic stellate cell
8
retinal pigment epithelial cell
7
H9
7
ascending aorta
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphoblastoid cell line
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
stomach
7
substantia nigra
6
SGBS preadipocytes
6
T cell
6
T-helper 2 cell
6
adrenal gland
6
amygdala
6
anterior cingulate cortex
6
brain
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
dendritic cell
6
gamma-delta T cell
6
hypothalamus
6
iPSC derived cell line
6
kidney interstitial cell
6
lymphocyte
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
nucleus accumbens
6
olfactory receptor cell
6
skeletal muscle fiber
6
spleen
5
cardiac fibroblast
5
C1 segment of cervical spinal cord
5
HUES8
5
T follicular helper cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
endothelial cell of umbilical vein
5
gastrocnemius medialis(Muscle - Skeletal)
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
memory B cell
5
mesangial cell
5
natural killer cell
5
neutrophil
5
ovary
5
pancreatic endothelial cell
5
psoas muscle
5
right lobe of liver
5
skeletal muscle myoblast
5
smooth muscle cell of the coronary artery
5
type I muscle cell
5
type II muscle cell
4
CyT49
4
HepG2
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Schwann cell
4
adult endothelial progenitor cell
4
bone tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
glutamatergic neuron
4
heart right ventricle
4
hepatic stellate cell
4
kidney glomerular epithelial cell
4
leukocyte
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
occipital lobe
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
renal cortical epithelial cell
4
skeletal muscle satellite cell
4
small intestine
4
spinal cord
4
thymus
4
uterus
4
vascular associated smooth muscle cell
4
visceral abdominal adipose tissue
3
CD4-positive helper T cell
3
Jurkat
3
S-shaped body
3
U937
3
astrocyte
3
blood cell
3
brain pericyte
3
choroid plexus epithelial cell
3
dorsolateral prefrontal cortex
3
enterocyte
3
globus pallidus
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney distal convoluted tubule epithelial cell
3
kidney epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
lung
3
medulla oblongata
3
mesendoderm
3
midbrain
3
muscle of leg
3
myofibroblast cell
3
naive B cel
3
naive regulatory T cell
3
pancreatic quiescent stellate cell
3
placenta
3
pons
3
renal pelvis
3
sigmoid colon
3
skin of body
3
superior temporal gyrus
3
testis
3
thyroid gland
3
transverse colon
3
trophoblast cell
2
hindlimb muscle
2
muscle of leg
2
A549
2
BJAB cell
2
CD4-positive, alpha-beta T cell
2
GM18507
2
GM19240
2
H7-hESC
2
HAP-1
2
HCT-116 cell
2
HCT116
2
HT-29
Date released
August, 2021
1
March, 2020
Software used
1
nospecificsoft_customcode
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
annotation_type_category!
ChIP-seq
biosample_term_name!
pancreatic acinar cell
month_released!
August, 2021
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR727XIO
released
Annotation file set
: A target gene prediction annotation in Human Neural Prgenitor Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP