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Citing CMDGA
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Annotation type
1
accessible chromatin
1
eQTL
1
target gene predictions
Annotation Category
1
Genetic variant effects
1
Target gene links
1
cis-regulatory elements
Annotation type Category
ChIP-seq
14
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
Available data
2
bed bed3+
File set status
3
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
3
transverse colon
2
HCT-116 cell
2
HCT116
2
HT-29
2
large intestine
2
sigmoid colon
1
RKO
1
SW480
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
Organ
3
intestine
3
large intestine
Date released
1
January, 2022
1
June, 2020
1
May, 2021
Software used
1
abc
1
macs
1
qTLtools
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
annotation_type_category!
ChIP-seq
month_released!
March, 2020
Showing 3 of 3 results
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Download
FileSet
DSR899VFT
released
Annotation file set
: colon transverse eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR692JFQ
released
Annotation file set
: enhancer-gene predicton of transverse_colon-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR464RYV
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Colon, Transverse from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP