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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
1
gene expression
1
variant allelic effects
Annotation Category
2
Target gene links
2
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
ChIP-seq
12
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
HiC
1
RNA-seq
Available data
4
bed bed3+
1
bigWig
1
tsv
File set status
6
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
5
primary cell
1
tissue
Biosample term
5
endothelial cell of umbilical vein
1
whole blood
Organ
677
epithelium
328
kidney
236
connective tissue
212
pancreas
159
brain
130
vasculature
96
blood vessel
87
heart
79
embryo
75
liver
73
musculature of body
63
eye
60
uterus
50
limb
49
adipose tissue
48
bodily fluid
48
intestine
47
blood
40
artery
29
skin of body
26
lung
25
large intestine
21
bone element
20
stomach
17
adrenal gland
14
esophagus
13
extraembryonic component
13
gonad
13
mammary gland
12
nerve
12
pituitary gland
10
lymphatic vessel
10
prostate gland
9
lymph node
8
skeleton
8
small intestine
7
ovary
7
thyroid gland
7
ureter
6
placenta
6
spleen
6
vein
5
bronchus
5
testis
5
thymus
bone marrow
4
breast
4
lymphoid tissue
4
penis
4
spinal cord
3
mouth
3
urinary bladder
2
tongue
2
vagina
1
nose
1
pericardium
1
trachea
Life stage
2
newborn
1
adult
Date released
2
May, 2020
1
June, 2020
1
March, 2020
1
March, 2024
1
May, 2021
Software used
1
abc
1
deltasvm
1
hiccups
1
macs
1
r
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
annotation_type_category!
ChIP-seq
biosample_term_name!
C1 segment of cervical spinal cord
organ_slims!
bone marrow
Showing 6 of 6 results
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Download
FileSet
DSR543LWM
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Whole Blood.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR784TGC
released
Annotation file set
: enhancer-gene predicton of endothelial_cell_of_umbilical_vein-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR690SAR
released
Annotation file set
: Accessible chromatin annotation for Cardiovascular HUVEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR088CRI
released
Annotation file set
: Variant allelic effects of endothelial cell of umbilical vein ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR603NLX
released
Annotation file set
: Accessible chromatin of endothelial cell of umbilical vein ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR049KAF
released
Annotation file set
: A target gene prediction annotation in endothelial cell of umbilical vein of DSR430XOJ Hi-C
Lab:
AMP-T2D consortium
Project:
AMP