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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
gene expression
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
ChIP-seq
16
DNase-seq
1
HiC
1
RNA-seq
Available data
3
bed bed3+
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
2
cell line
2
tissue
Biosample term
2
GM18507
1
Peyer's patch
1
small intestine - terminal Ileum
Organ
687
epithelium
328
kidney
244
connective tissue
212
pancreas
159
brain
133
vasculature
96
blood vessel
89
heart
79
embryo
77
liver
73
musculature of body
63
eye
60
uterus
50
limb
49
adipose tissue
48
bodily fluid
48
intestine
47
blood
40
artery
29
skin of body
26
lung
25
large intestine
21
bone element
20
stomach
17
adrenal gland
14
esophagus
13
extraembryonic component
13
gonad
13
lymphatic vessel
13
mammary gland
12
nerve
12
pituitary gland
10
prostate gland
9
lymph node
9
spinal cord
8
skeleton
8
small intestine
7
ovary
7
thyroid gland
7
ureter
6
placenta
6
spleen
6
vein
5
bronchus
5
testis
5
thymus
4
bone marrow
4
breast
4
lymphoid tissue
4
penis
3
mouth
3
urinary bladder
2
tongue
2
vagina
1
nose
1
pericardium
1
trachea
Life stage
1
adult
Date released
2
June, 2020
1
February, 2024
1
March, 2024
Software used
2
macs
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type_category!
ChIP-seq
biosample_term_name!
HS-SY-2 cell
Showing 4 of 4 results
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Download
FileSet
DSR115KNL
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Small Intestine - Terminal Ileum.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR656RCL
released
Annotation file set
: Target gene predictions from Hi-C on lympoblastoid cell lines from 1000G individuals. GM18507
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR135FWI
released
Annotation file set
: Accessible chromatin annotation for Blood Peyers Patches from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR632NNZ
released
Annotation file set
: Accessible chromatin annotation for Blood GM18507 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP