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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
7
target gene predictions
1
accessible chromatin
Annotation Category
7
Target gene links
1
cis-regulatory elements
Annotation type Category
ChIP-seq
6
HiC
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
6
GRCh38
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
52
HeLa-S3
47
H1-hESC
42
monocyte
41
endothelial cell
33
macrophage
31
fibroblast
26
hepatocyte
26
retina
23
smooth muscle cell
21
pericyte cell
20
pigmented layer of retina
19
HFFc6
19
kidney
18
K562
18
epithelial cell of proximal tubule
18
neural progenitor cell
18
subcutaneous adipose tissue
17
glomerular endothelial cell
17
induced pluripotent stem cell
17
liver
15
B cell
15
CD14-positive monocyte
15
adipocyte
15
regulatory T cell
14
excitatory neuron
13
CD8-positive, alpha-beta T cell
13
coronary artery
12
adipose tissue
12
astrocyte
12
natural killer cell
12
right atrium auricular region
12
tibial nerve
11
T cell
11
T-helper 1 cell
11
cardiomyocytes
11
heart
11
tibial artery
10
T-helper 17 cell
10
endothelial cell of hepatic sinusoid
10
frontal cortex
10
pituitary stalk
10
putamen
9
caudate nucleus
9
extended pluripotent stem (EPS) cells
9
glomerular visceral epithelial cell
9
heart left ventricle
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
omental fat pad
9
progenitor cell of endocrine pancreas
9
retinal pigment epithelial cell
9
skeletal muscle fiber
8
Ammon's horn
8
GM12878
8
cardiomyocytes (cardiac muscle cell)
8
cerebellum
8
dendritic cell
8
embryonic stem cell
8
glutamatergic neuron
8
mesenchymal stem cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
osteoblast
8
skeletal muscle satellite cell
7
H9
7
ascending aorta
7
endothelial cell of lymphatic vessel
7
erythroblast
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphoblastoid cell line
7
mast cell
7
mesangial cell
7
stomach
7
substantia nigra
7
type I muscle cell
7
type II muscle cell
6
CD4-positive helper T cell
6
SGBS preadipocytes
6
T-helper 2 cell
6
adrenal gland
6
amygdala
6
anterior cingulate cortex
6
brain
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
gamma-delta T cell
6
hepatic stellate cell
6
hypothalamus
6
iPSC derived cell line
6
keratinocyte
6
lymphocyte
6
naive B cell
6
nucleus accumbens
6
olfactory receptor cell
6
spleen
6
type II pneumocyte
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
endocardial cell
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
gastrocnemius medialis(Muscle - Skeletal)
5
heart right ventricle
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
myofibroblast cell
5
neutrophil
5
ovary
5
pancreatic endothelial cell
5
psoas muscle
5
right lobe of liver
5
skeletal muscle myoblast
5
smooth muscle cell of the coronary artery
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Schwann cell
4
activated CD4-positive, alpha-beta T cell
4
adult endothelial progenitor cell
4
blood vessel smooth muscle cell
4
bone tissue
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
enteric smooth muscle cell
4
kidney connecting tubule epithelial cell
4
kidney glomerular epithelial cell
leukocyte
4
luminal epithelial cell of mammary gland
Organ
8
blood
8
bodily fluid
Date released
6
February, 2024
1
June, 2020
1
May, 2021
Software used
1
abc
1
macs
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type_category!
ChIP-seq
biosample_term_name!
leukocyte
organ_slims!
pancreas
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR413SNG
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in situ crosslinking, with SDS treatment, without restriction digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR828CUR
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in situ crosslinking, without SDS treatment, without restriction digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR519UOA
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in vitro crosslinking, with SDS, NcoI digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR974VNF
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in vitro crosslinking, with SDS, without restriction digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR815MBX
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in vitro crosslinking, with SDS, with RNase A digestion, without HindIII digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR193AOO
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in vitro crosslinking, with SDS, HindIII digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR117MIS
released
Annotation file set
: enhancer-gene predicton of GM12878-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR789FEO
released
Annotation file set
: Accessible chromatin annotation for Blood GM12878 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP