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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
target gene predictions
1
eQTL
1
gene expression
Annotation Category
3
cis-regulatory elements
2
Target gene links
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
ChIP-seq
64
DNase-seq
2
ATAC-seq
2
H3K27ac ChIP-Seq
2
RNA-seq
Available data
5
bed bed3+
1
tsv
File set status
7
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
8
cell line
7
tissue
Biosample term
38
islet of Langerhans
24
retina
20
pigmented layer of retina
19
kidney
16
liver
16
subcutaneous adipose tissue
12
adipose tissue
12
coronary artery
10
heart
10
pancreas
10
right atrium auricular region
10
tibial artery
9
putamen
9
tibial nerve
8
caudate nucleus
8
frontal cortex
8
heart left ventricle
7
Ammon's horn
7
omental fat pad
7
stomach
6
adrenal gland
6
ascending aorta
6
body of pancreas
6
spleen
6
substantia nigra
5
amygdala
5
anterior cingulate cortex
5
brain
5
cerebellum
5
cerebellum (Hemisphere)
5
heart right ventricle
5
hypothalamus
5
nucleus accumbens
5
ovary
5
psoas muscle
4
C1 segment of cervical spinal cord
4
bone tissue
4
cartilage tissue
4
right lobe of liver
4
small intestine
4
thymus
4
uterus
4
visceral abdominal adipose tissue
3
aorta
3
dorsolateral prefrontal cortex
3
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
gastrocnemius medialis(Muscle - Skeletal)
3
globus pallidus
3
left cardiac atrium
3
left ventricle myocardium
3
lung
3
medulla oblongata
3
midbrain
3
muscle of leg
3
occipital lobe
3
placenta
3
pons
3
renal pelvis
3
sigmoid colon
3
skin of body
3
spinal cord
3
superior temporal gyrus
3
testis
3
thyroid gland
3
transverse colon
2
hindlimb muscle
2
muscle of leg
2
blood
2
breast epithelium
2
cortex of kidney
2
esophagus
2
esophagus muscularis mucosa
2
gastrocnemius medialis
2
large intestine
2
left renal cortex interstitium
2
left renal pelvis
2
middle frontal gyrus
2
minor salivary gland
2
muscle of arm
2
pancreatic ductal cell
2
pancreatic stellate cell
2
prostate gland
2
renal cortex interstitium
2
right cardiac atrium
2
right kidney
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle tissue
2
thoracic aorta
2
tissue
2
trophoblast
2
vagina
1
left kidney
1
omental fat pad
1
Pancreatic islets
1
Peyer's patch
1
Schwann cell
1
abdominal aorta artery
1
aorta wall
1
aortic valve
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
cardiac ventricle
1
cerebellar cortex
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
chorion membrane
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
cortex
1
crypt of Lieberkuhn
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
embryonic facial prominence
1
endothelial cell
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
esophagus squamous epithelium
1
eye
1
fallopian tube
1
fetal heart
1
forelimb muscle
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
inferior parietal cortex
1
kidney - cortex
1
kidney - medulla
1
layer of hippocampus
1
limb
1
mitral valve
1
muscle of trunk
1
nephron tubule
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
pituitary
1
pituitary gland
1
prefrontal cortex
1
prostate
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulmonary valve
1
renal cortex tubule
1
right lung
1
skeletal muscle
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
1
synovial joint
1
thyroid
1
tissue-resident macrophage
1
tongue
1
tricuspid valve
1
type B pancreatic cell
1
umbilical cord
1
upper lobe of left lung
1
urinary bladder
1
white adipose tissue
1
whole blood
Organ
7
stomach
Life stage
1
adult
Date released
3
June, 2020
2
May, 2021
1
January, 2022
1
March, 2024
Software used
3
macs
2
abc
1
qTLtools
1
r
Lab
5
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type_category!
ChIP-seq
month_released!
February, 2020
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR007TCR
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Stomach.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR542EVP
released
Annotation file set
: stomach eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR408DBU
released
Annotation file set
: enhancer-gene predicton of stomach_fetal-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR821UNZ
released
Annotation file set
: enhancer-gene predicton of stomach-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR355FEE
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Stomach from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR769DZK
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Gastric primary sample from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR936OND
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Fetal stomach from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP