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Citing CMDGA
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Annotation type
7
target gene predictions
Annotation Category
7
Target gene links
Annotation type Category
ChIP-seq
9
DNase-seq
6
HiC
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
6
GRCh38
Organism
7
Homo sapiens
Biosample type
7
cell line
Biosample term
52
HeLa-S3
47
H1-hESC
42
monocyte
39
islet of Langerhans
30
macrophage
28
fibroblast
26
retina
21
smooth muscle cell
19
HFFc6
19
kidney
19
pericyte cell
18
K562
18
neural progenitor cell
18
subcutaneous adipose tissue
17
induced pluripotent stem cell
17
liver
15
CD14-positive monocyte
15
regulatory T cell
14
excitatory neuron
13
CD8-positive, alpha-beta T cell
13
adipocyte
13
coronary artery
12
B cell
12
adipose tissue
12
astrocyte
12
right atrium auricular region
12
tibial nerve
11
T cell
11
T-helper 1 cell
11
cardiomyocytes
11
heart
11
tibial artery
10
T-helper 17 cell
10
frontal cortex
10
pancreas
10
pancreatic stellate cell
10
pituitary stalk
10
putamen
9
caudate nucleus
9
extended pluripotent stem (EPS) cells
9
heart left ventricle
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
natural killer cell
9
omental fat pad
9
progenitor cell of endocrine pancreas
9
skeletal muscle fiber
8
Ammon's horn
8
GM12878
8
body of pancreas
8
cardiomyocytes (cardiac muscle cell)
8
cerebellum
8
embryonic stem cell
8
glutamatergic neuron
8
mesenchymal stem cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
osteoblast
8
skeletal muscle satellite cell
7
H9
7
ascending aorta
7
dendritic cell
7
erythroblast
7
kidney interstitial cell
7
lymphoblastoid cell line
7
mesangial cell
7
stomach
7
substantia nigra
7
type I muscle cell
7
type II muscle cell
6
CD4-positive helper T cell
6
SGBS preadipocytes
6
T-helper 2 cell
6
adrenal gland
6
amygdala
6
anterior cingulate cortex
6
brain
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
gamma-delta T cell
6
hypothalamus
6
iPSC derived cell line
6
lymphocyte
6
naive B cell
6
nucleus accumbens
6
olfactory receptor cell
6
spleen
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Fibroblast
5
HUES8
5
M2 Macrophage
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
gastrocnemius medialis(Muscle - Skeletal)
5
heart right ventricle
5
hepatic stellate cell
5
inhibitory neuron
5
left ventricle myocardium
5
neutrophil
5
ovary
5
psoas muscle
5
right lobe of liver
5
skeletal muscle myoblast
5
smooth muscle cell of the coronary artery
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Schwann cell
4
activated CD4-positive, alpha-beta T cell
4
adult endothelial progenitor cell
4
blood vessel smooth muscle cell
4
bone tissue
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
enteric smooth muscle cell
4
leukocyte
4
mast cell
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
myofibroblast cell
4
nephron progenitor
4
occipital lobe
4
pancreatic MUC5B+ductal cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
plasma cell
4
skin fibroblast
4
small intestine
4
smooth muscle cell of the esophagus
4
spinal cord
4
thymus
4
uterus
4
vascular associated smooth muscle cell
4
visceral abdominal adipose tissue
3
Cycling Mononuclear Phagocyte
3
Jurkat
3
Mast Cell
3
U937
3
activated CD8-positive, alpha-beta T cell
3
aorta
3
blood cell
3
brain pericyte
3
ciliated cell
3
dorsolateral prefrontal cortex
3
enteric neuron
3
glial cell
3
globus pallidus
3
kidney cell
3
kidney resident macrophage
3
left cardiac atrium
3
lung
3
medulla oblongata
3
mesendoderm
3
microglial cell
3
midbrain
3
muscle of leg
3
naive B cel
3
naive regulatory T cell
3
naive t cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic quiescent stellate cell
3
placenta
3
plasmacytoid dendritic cell
3
pons
3
renal pelvis
3
schwann cell
Organ
epithelium
7
embryo
Date released
6
February, 2024
1
May, 2021
Software used
1
abc
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type_category!
ChIP-seq
biosample_term_name!
Peyer's patch
organ_slims!
epithelium
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR065MCS
released
Annotation file set
: Target gene predictions from Hi-C on H9 cells during cardiomyocyte differentiation. primitive cardiomyocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR258GDM
released
Annotation file set
: Target gene predictions from Hi-C on H9 cells during cardiomyocyte differentiation. mesoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR991YDS
released
Annotation file set
: Target gene predictions from Hi-C on H9 cells during cardiomyocyte differentiation. cardiac mesoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR247GQU
released
Annotation file set
: Target gene predictions from Hi-C on H9 cells during cardiomyocyte differentiation. cardiac progenitors
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR818GTP
released
Annotation file set
: Target gene predictions from Hi-C on H9 cells during cardiomyocyte differentiation. ventricular cardiomyocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR447SRX
released
Annotation file set
: Target gene predictions from Hi-C on H9 cells during cardiomyocyte differentiation. undifferentiated
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR118KLN
released
Annotation file set
: enhancer-gene predicton of H9-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP