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Citing CMDGA
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Annotation type
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
1
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
ChIP-seq
49
DNase-seq
2
RNA-seq
1
pCHi-C
Available data
1
bed bed3+
1
tsv
File set status
3
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
3
Homo sapiens
Biosample type
11
primary cell
3
tissue
Biosample term
38
islet of Langerhans
26
retina
20
pigmented layer of retina
19
kidney
18
subcutaneous adipose tissue
17
liver
13
coronary artery
12
adipose tissue
12
right atrium auricular region
12
tibial nerve
11
heart
11
tibial artery
10
frontal cortex
10
pancreas
10
putamen
9
caudate nucleus
9
heart left ventricle
9
omental fat pad
8
Ammon's horn
8
body of pancreas
8
cerebellum
7
ascending aorta
7
stomach
7
substantia nigra
6
adrenal gland
6
amygdala
6
anterior cingulate cortex
6
brain
6
cerebellum (Hemisphere)
6
hypothalamus
6
nucleus accumbens
6
spleen
5
C1 segment of cervical spinal cord
5
gastrocnemius medialis(Muscle - Skeletal)
5
heart right ventricle
5
left ventricle myocardium
5
ovary
5
psoas muscle
5
right lobe of liver
4
bone tissue
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
occipital lobe
4
small intestine
4
thymus
4
uterus
4
visceral abdominal adipose tissue
3
aorta
3
dorsolateral prefrontal cortex
3
globus pallidus
3
left cardiac atrium
3
lung
3
medulla oblongata
3
midbrain
3
muscle of leg
3
placenta
3
pons
3
renal pelvis
3
sigmoid colon
3
skeletal muscle tissue
3
skin of body
3
spinal cord
3
superior temporal gyrus
3
testis
3
thyroid gland
3
transverse colon
2
hindlimb muscle
2
muscle of leg
2
blood
2
breast epithelium
2
cortex of kidney
2
esophagus
2
esophagus muscularis mucosa
2
gastrocnemius medialis
2
large intestine
2
left renal cortex interstitium
2
left renal pelvis
2
middle frontal gyrus
2
minor salivary gland
2
muscle of arm
2
pancreatic ductal cell
2
pancreatic stellate cell
2
prostate gland
2
renal cortex interstitium
2
right cardiac atrium
2
right kidney
2
right renal cortex interstitium
2
right renal pelvis
2
thoracic aorta
2
tissue
2
trophoblast
2
vagina
1
left kidney
1
omental fat pad
1
Pancreatic islets
1
Peyer's patch
1
Schwann cell
1
abdominal aorta artery
1
aorta wall
1
aortic valve
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
cardiac ventricle
1
cerebellar cortex
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
chorion membrane
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
cortex
1
crypt of Lieberkuhn
1
diencephalon
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
embryonic facial prominence
1
endothelial cell
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
esophagus squamous epithelium
1
eye
1
fallopian tube
1
fetal heart
1
forelimb muscle
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
inferior parietal cortex
1
kidney - cortex
1
kidney - medulla
1
layer of hippocampus
1
limb
1
metanephros
1
mitral valve
1
muscle of trunk
1
nephron tubule
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
parietal lobe
1
pituitary
1
pituitary gland
1
prefrontal cortex
1
prostate
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulmonary valve
1
renal cortex tubule
1
renal glomerulus
1
right lung
1
skeletal muscle
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
1
synovial joint
1
temporal lobe
1
thyroid
1
tissue-resident macrophage
1
tongue
1
tricuspid valve
1
type B pancreatic cell
1
umbilical cord
1
upper lobe of left lung
1
urinary bladder
1
white adipose tissue
1
whole blood
Organ
3
lung
Life stage
1
adult
Date released
1
January, 2022
1
March, 2020
1
March, 2024
Software used
1
nospecificsoft_customcode
1
qTLtools
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type_category!
ChIP-seq
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR315SRJ
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Lung.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR873OXX
released
Annotation file set
: lung eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR063XFX
released
Annotation file set
: A target gene prediction annotation in Human Lung of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP