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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
eQTL
1
accessible chromatin
1
gene expression
1
sQTL
Annotation Category
3
Genetic variant effects
3
Target gene links
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
ChIP-seq
45
DNase-seq
4
RNA-seq
2
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
4
bed bed3+
1
bigWig
1
tsv
File set status
8
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
40
monocyte
36
endothelial cell
28
fibroblast
28
macrophage
25
hepatocyte
20
smooth muscle cell
19
pericyte cell
18
epithelial cell of proximal tubule
18
pancreatic beta cell
17
glomerular endothelial cell
17
pancreatic alpha cell
16
pancreatic acinar cell
16
pancreatic delta cell
16
pancreatic ductal cell
15
CD14-positive monocyte
15
regulatory T cell
12
CD8-positive, alpha-beta T cell
12
astrocyte
12
excitatory neuron
11
T-helper 1 cell
10
B cell
10
T cell
10
T-helper 17 cell
10
endothelial cell of hepatic sinusoid
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
skeletal muscle fiber
8
glutamatergic neuron
8
natural killer cell
8
osteoblast
8
pancreatic stellate cell
8
skeletal muscle satellite cell
7
erythroblast
7
glomerular visceral epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
T-helper 2 cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
gamma-delta T cell
6
keratinocyte
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
endothelial cell of umbilical vein
5
gabaergic neuron
5
hepatic stellate cell
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesenchymal stem cell
5
pancreatic endothelial cell
4
CD4-positive, alpha-beta T cell
4
activated CD4-positive, alpha-beta T cell
4
adipocyte
4
adult endothelial progenitor cell
4
blood vessel smooth muscle cell
4
cardiac muscle cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
kidney connecting tubule epithelial cell
4
kidney glomerular epithelial cell
4
leukocyte
4
luminal epithelial cell of mammary gland
4
mast cell
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
myofibroblast cell
4
nephron progenitor
4
neutrophil
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
plasma cell
4
renal cortical epithelial cell
4
skeletal muscle myoblast
4
smooth muscle cell of the esophagus
4
type I pneumocyte
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
activated CD8-positive, alpha-beta T cell
3
blood cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
fibroblast of cardiac tissue
3
glial cell
3
goblet cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
mammary gland epithelial cell
3
microglial cell
3
naive B cel
3
naive regulatory T cell
3
naive t cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic quiescent stellate cell
3
parietal cell
3
peptic cell
3
plasmacytoid dendritic cell
3
retinal pigment epithelial cell
3
schwann cell
3
skin fibroblast
3
smooth muscle cell of the coronary artery
3
thyroid follicular cell
3
type B pancreatic cell
2
Kupffer cell
2
Muller cell
2
T-cell
2
acute myeloid leukemia cell
2
alternatively activated macrophage
2
alveolar macrophage
Life stage
2
adult
Date released
3
May, 2021
2
January, 2021
1
February, 2024
1
January, 2022
1
May, 2020
Software used
3
limix
1
abc
1
chicago
1
cicero
1
macs
minfi
1
qTLtools
1
r
1
sqtlseeker
Lab
5
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Jesse Engreitz, Stanford University
Project
6
AMP
2
T1D
RFA
6
AMP
2
T1D
annotation_type_category!
ChIP-seq
software_used.software.name!
minfi
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR770XRL
released
Annotation file set
: CD4 T-cell naive eQTL of studay Schmiedel_2018 from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR871LYN
released
Annotation file set
: Gene expression annotation for BLUEPRINT study of ncRNA-seq of EBI:E-MTAB-2319 for CD4 Naive(CD4+ CCR7+ CD45RA+ CD45RO-)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR631VBI
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR595CTR
released
Annotation file set
: expression quantitative trait loci (eQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR199UUA
released
Annotation file set
: enhancer-gene predicton of CD34-positive_mobilized-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR268KVC
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of naive_CD4_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR134FCG
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of naive_CD4_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR532XSI
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of naive thymus-derived CD4-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP