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Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
eQTL
1
gene expression
Annotation Category
2
Target gene links
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
ChIP-seq
90
DNase-seq
2
RNA-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
2
bed bed3+
1
tsv
File set status
4
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
52
HeLa-S3
46
H1-hESC
40
monocyte
38
endothelial cell
38
islet of Langerhans
29
macrophage
28
fibroblast
25
retina
24
hepatocyte
21
EndoC_BH1
21
smooth muscle cell
20
pancreatic ductal cell
20
pigmented layer of retina
19
HFFc6
19
pericyte cell
18
epithelial cell of proximal tubule
18
kidney
18
neural progenitor cell
18
pancreatic beta cell
18
subcutaneous adipose tissue
17
K562
17
induced pluripotent stem cell
17
pancreatic acinar cell
17
pancreatic alpha cell
16
glomerular endothelial cell
16
liver
16
pancreatic delta cell
15
CD14-positive monocyte
14
excitatory neuron
13
coronary artery
13
regulatory T cell
12
CD8-positive, alpha-beta T cell
12
adipocyte
12
adipose tissue
12
astrocyte
11
cardiomyocytes
11
right atrium auricular region
11
tibial nerve
10
B cell
10
T cell
10
T-helper 1 cell
10
T-helper 17 cell
10
endothelial cell of hepatic sinusoid
10
pancreatic stellate cell
10
pituitary stalk
10
tibial artery
9
extended pluripotent stem (EPS) cells
9
frontal cortex
9
heart
9
heart left ventricle
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
omental fat pad
9
progenitor cell of endocrine pancreas
9
putamen
9
skeletal muscle fiber
8
body of pancreas
8
cardiomyocytes (cardiac muscle cell)
8
caudate nucleus
8
cerebellum
8
embryonic stem cell
8
glomerular visceral epithelial cell
8
glutamatergic neuron
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
natural killer cell
8
pancreas
8
retinal pigment epithelial cell
8
skeletal muscle satellite cell
7
Ammon's horn
7
GM12878
7
H9
7
ascending aorta
7
dendritic cell
7
erythroblast
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
7
mesenchymal stem cell
7
substantia nigra
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
T-helper 2 cell
6
amygdala
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
gamma-delta T cell
6
hypothalamus
6
iPSC derived cell line
6
keratinocyte
6
lymphoblastoid cell line
6
lymphocyte
6
naive B cell
6
nucleus accumbens
6
olfactory receptor cell
6
osteoblast
6
pancreatic polypeptide-secreting cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
SGBS preadipocytes
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
adrenal gland
5
basal cell
5
brain
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
gabaergic neuron
5
gastrocnemius medialis(Muscle - Skeletal)
5
heart right ventricle
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
neutrophil
5
pancreatic endothelial cell
5
right lobe of liver
5
smooth muscle cell of the coronary artery
5
spleen
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HUES8
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Schwann cell
4
activated CD4-positive, alpha-beta T cell
4
adult endothelial progenitor cell
4
blood vessel smooth muscle cell
4
bone tissue
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
endothelial cell of umbilical vein
4
enteric smooth muscle cell
4
hepatic stellate cell
4
kidney connecting tubule epithelial cell
4
leukocyte
Organ
3
lung
1
intestine
1
large intestine
Life stage
1
adult
Date released
1
January, 2022
June, 2020
1
March, 2020
1
March, 2024
1
May, 2021
Software used
1
abc
1
nospecificsoft_customcode
1
qTLtools
1
r
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
annotation_type_category!
ChIP-seq
biosample_term_name!
colon epithelial cell
month_released!
June, 2020
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR315SRJ
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Lung.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR873OXX
released
Annotation file set
: lung eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR232GSH
released
Annotation file set
: enhancer-gene predicton of large_intestine_fetal-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR063XFX
released
Annotation file set
: A target gene prediction annotation in Human Lung of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP