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Schema
Citing CMDGA
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Annotation type
5
target gene predictions
1
accessible chromatin
1
eQTL
1
gene expression
Annotation Category
5
Target gene links
1
Gene expression levels
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
ChIP-seq
62
DNase-seq
2
HiC
2
RNA-seq
2
pCHi-C
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
1
tsv
File set status
8
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
52
HeLa-S3
47
H1-hESC
39
monocyte
38
endothelial cell
36
islet of Langerhans
29
macrophage
28
fibroblast
25
retina
24
hepatocyte
21
pancreatic ductal cell
21
smooth muscle cell
20
EndoC_BH1
20
pigmented layer of retina
19
HFFc6
19
pericyte cell
18
K562
18
kidney
18
neural progenitor cell
18
pancreatic beta cell
17
epithelial cell of proximal tubule
17
induced pluripotent stem cell
17
liver
17
pancreatic acinar cell
17
pancreatic alpha cell
17
subcutaneous adipose tissue
16
glomerular endothelial cell
16
pancreatic delta cell
15
CD14-positive monocyte
14
excitatory neuron
13
adipocyte
13
regulatory T cell
12
astrocyte
11
T cell
11
adipose tissue
11
cardiomyocytes
11
coronary artery
10
CD8-positive, alpha-beta T cell
10
endothelial cell of hepatic sinusoid
10
pancreatic stellate cell
10
pituitary stalk
10
right atrium auricular region
10
tibial nerve
9
B cell
9
T-helper 1 cell
9
extended pluripotent stem (EPS) cells
9
frontal cortex
9
heart
9
omental fat pad
9
pancreas
9
progenitor cell of endocrine pancreas
9
putamen
9
retinal pigment epithelial cell
9
skeletal muscle fiber
9
tibial artery
8
Ammon's horn
8
GM12878
8
T-helper 17 cell
8
caudate nucleus
8
cerebellum
8
embryonic stem cell
8
glomerular visceral epithelial cell
8
glutamatergic neuron
8
mesenchymal stem cell
8
natural killer cell
8
osteoblast
8
skeletal muscle satellite cell
7
H9
7
body of pancreas
7
cardiomyocytes (cardiac muscle cell)
7
dendritic cell
7
heart left ventricle
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphoblastoid cell line
7
memory B cell
7
mesangial cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
stomach
7
substantia nigra
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
CD4-positive helper T cell
6
SGBS preadipocytes
6
adrenal gland
6
amygdala
6
anterior cingulate cortex
6
ascending aorta
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
erythroblast
6
hypothalamus
6
iPSC derived cell line
6
keratinocyte
6
lymphocyte
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
spleen
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
brain
5
cardiac precursors (cardiac muscle cell)
5
cerebellum (Hemisphere)
5
chondrocyte
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
gastrocnemius medialis(Muscle - Skeletal)
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
ovary
5
pancreatic endothelial cell
5
psoas muscle
5
right lobe of liver
5
smooth muscle cell of the coronary artery
4
CyT49
4
HepG2
4
Schwann cell
4
T-helper 2 cell
4
blood vessel smooth muscle cell
4
bone tissue
4
cardiac muscle cell
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
enteric smooth muscle cell
4
gamma-delta T cell
4
heart right ventricle
4
hepatic stellate cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
luminal epithelial cell of mammary gland
4
mammary gland epithelial cell
4
mast cell
4
mesothelial cell
4
myofibroblast cell
4
nephron progenitor
4
neutrophil
4
pancreatic A cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
Organ
5
musculature of body
3
lung
Life stage
2
adult
1
child
Date released
4
March, 2020
1
January, 2022
1
June, 2020
1
March, 2024
1
May, 2021
Software used
2
hiccups
2
nospecificsoft_customcode
1
abc
1
macs
1
qTLtools
1
r
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type_category!
ChIP-seq
month_released!
May, 2020
organ_slims!
lymphatic vessel
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR315SRJ
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Lung.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR873OXX
released
Annotation file set
: lung eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR593OAU
released
Annotation file set
: enhancer-gene predicton of psoas_muscle-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR404JHM
released
Annotation file set
: Accessible chromatin annotation for Muscle Muscles from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR735RYC
released
Annotation file set
: A target gene prediction annotation in psoas muscle of DSR656CHU Hi-C for child
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR694YUN
released
Annotation file set
: A target gene prediction annotation in psoas muscle of DSR492BLD Hi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR697CGG
released
Annotation file set
: A target gene prediction annotation in Human Psoas of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR063XFX
released
Annotation file set
: A target gene prediction annotation in Human Lung of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP