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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
ChIP-seq
6
DNase-seq
1
ATAC-seq
1
snATAC-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
3
primary cell
tissue
1
in vitro differentiated cells
Biosample term
52
HeLa-S3
47
H1-hESC
42
monocyte
37
endothelial cell
30
macrophage
28
fibroblast
25
hepatocyte
21
EndoC_BH1
21
smooth muscle cell
19
HFFc6
19
pancreatic ductal cell
19
pericyte cell
18
K562
18
epithelial cell of proximal tubule
18
neural progenitor cell
18
pancreatic beta cell
17
glomerular endothelial cell
17
induced pluripotent stem cell
17
pancreatic alpha cell
16
pancreatic acinar cell
16
pancreatic delta cell
15
CD14-positive monocyte
15
regulatory T cell
14
excitatory neuron
13
CD8-positive, alpha-beta T cell
12
B cell
12
adipocyte
12
astrocyte
11
T cell
11
T-helper 1 cell
11
cardiomyocytes
10
T-helper 17 cell
10
endothelial cell of hepatic sinusoid
10
pituitary stalk
9
extended pluripotent stem (EPS) cells
9
glomerular visceral epithelial cell
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
natural killer cell
9
progenitor cell of endocrine pancreas
9
skeletal muscle fiber
8
GM12878
8
cardiomyocytes (cardiac muscle cell)
8
mesenchymal stem cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
osteoblast
8
pancreatic stellate cell
8
skeletal muscle satellite cell
7
H9
7
dendritic cell
7
embryonic stem cell
7
erythroblast
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphoblastoid cell line
7
mesangial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
CD4-positive helper T cell
6
T-helper 2 cell
6
cardiac precursors (cardiac muscle cell)
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
gamma-delta T cell
6
iPSC derived cell line
6
keratinocyte
6
lymphocyte
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
hepatic stellate cell
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
neutrophil
5
pancreatic endothelial cell
5
skeletal muscle myoblast
5
smooth muscle cell of the coronary artery
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
activated CD4-positive, alpha-beta T cell
4
adult endothelial progenitor cell
4
blood vessel smooth muscle cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
kidney connecting tubule epithelial cell
4
kidney glomerular epithelial cell
4
leukocyte
4
luminal epithelial cell of mammary gland
4
mammary gland epithelial cell
4
mast cell
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
myofibroblast cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
plasma cell
4
renal cortical epithelial cell
4
skin fibroblast
4
smooth muscle cell of the esophagus
4
type I pneumocyte
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Jurkat
3
Mast Cell
3
S-shaped body
3
SGBS preadipocytes
3
Schwann cell
3
U937
3
activated CD8-positive, alpha-beta T cell
3
blood cell
3
brain pericyte
3
choroid plexus epithelial cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
glial cell
3
goblet cell
Organ
4
connective tissue
4
skin of body
Date released
2
June, 2020
2
November, 2021
Software used
3
macs
1
abc
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
Project
2
AMP
2
ENCODE
RFA
2
AMP
2
ENCODE3
annotation_type_category!
ChIP-seq
biosample_type!
tissue
month_released!
November, 2022
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR734CMY
released
Annotation file set
: Target gene predictions of Fibroblast (Epithelial) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR579NBW
released
Annotation file set
: Accessible chromatin annotation of Fibroblast (Epithelial) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR583DSL
released
Annotation file set
: Accessible chromatin annotation for Epidermis Skin fibroblasts from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR595LTD
released
Annotation file set
: Accessible chromatin annotation for Epidermis Fetal skin from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP