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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
ChIP-seq
43
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
38
islet of Langerhans
26
retina
20
pigmented layer of retina
18
subcutaneous adipose tissue
17
liver
13
coronary artery
12
adipose tissue
12
right atrium auricular region
12
tibial nerve
11
heart
11
tibial artery
10
frontal cortex
10
pancreas
10
putamen
9
caudate nucleus
9
heart left ventricle
9
omental fat pad
8
Ammon's horn
8
body of pancreas
8
cerebellum
7
ascending aorta
7
stomach
7
substantia nigra
6
adrenal gland
amygdala
6
anterior cingulate cortex
6
brain
6
cerebellum (Hemisphere)
6
hypothalamus
6
nucleus accumbens
6
spleen
5
C1 segment of cervical spinal cord
5
gastrocnemius medialis(Muscle - Skeletal)
5
heart right ventricle
5
left ventricle myocardium
5
ovary
5
psoas muscle
5
right lobe of liver
4
bone tissue
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
occipital lobe
4
small intestine
4
thymus
4
uterus
4
visceral abdominal adipose tissue
3
aorta
3
dorsolateral prefrontal cortex
3
globus pallidus
3
left cardiac atrium
3
lung
3
medulla oblongata
3
midbrain
3
muscle of leg
3
placenta
3
pons
3
sigmoid colon
3
skeletal muscle tissue
3
skin of body
3
spinal cord
3
superior temporal gyrus
3
testis
3
thyroid gland
3
transverse colon
2
hindlimb muscle
2
muscle of leg
2
blood
2
breast epithelium
2
esophagus
2
esophagus muscularis mucosa
2
gastrocnemius medialis
2
large intestine
2
middle frontal gyrus
2
minor salivary gland
2
muscle of arm
2
pancreatic ductal cell
2
pancreatic stellate cell
2
prostate gland
2
right cardiac atrium
2
thoracic aorta
2
tissue
2
trophoblast
2
vagina
1
omental fat pad
1
Pancreatic islets
1
Peyer's patch
1
Schwann cell
1
abdominal aorta artery
1
aorta wall
1
aortic valve
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
cardiac ventricle
1
cerebellar cortex
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
chorion membrane
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
cortex
1
crypt of Lieberkuhn
1
diencephalon
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
embryonic facial prominence
1
endothelial cell
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
esophagus squamous epithelium
1
eye
1
fallopian tube
1
fetal heart
1
forelimb muscle
1
gastric (mucosa of stomach)
1
inferior parietal cortex
1
layer of hippocampus
1
limb
1
mitral valve
1
muscle of trunk
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
parietal lobe
1
pituitary
1
pituitary gland
1
prefrontal cortex
1
prostate
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulmonary valve
1
right lung
1
skeletal muscle
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
1
synovial joint
1
temporal lobe
1
thyroid
1
tissue-resident macrophage
1
tongue
1
tricuspid valve
1
type B pancreatic cell
1
umbilical cord
1
upper lobe of left lung
1
urinary bladder
1
white adipose tissue
1
whole blood
Organ
3
limb
3
musculature of body
Life stage
1
fetal
Date released
1
January, 2020
1
June, 2020
1
May, 2021
Software used
2
macs
1
abc
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
annotation_type_category!
ChIP-seq
biosample_term_name!
amygdala
organ_slims!
kidney
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR330HPF
released
Annotation file set
: enhancer-gene predicton of muscle_of_leg_fetal-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR466IWS
released
Annotation file set
: Accessible chromatin annotation for Muscle Fetal muscle from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR357EDZ
released
Annotation file set
: Accessible chromatin annotation of skeletal muscle leg from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP