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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
ChIP-seq
9
DNase-seq
Available data
1
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
0
in vitro differentiated cells
Biosample term
38
islet of Langerhans
26
retina
20
pigmented layer of retina
19
kidney
18
neural progenitor cell
18
subcutaneous adipose tissue
17
liver
13
coronary artery
12
adipose tissue
12
right atrium auricular region
12
tibial nerve
11
cardiomyocytes
11
heart
11
tibial artery
10
frontal cortex
10
pancreas
10
putamen
9
adipocyte
9
caudate nucleus
9
extended pluripotent stem (EPS) cells
9
heart left ventricle
9
induced pluripotent stem cell
9
omental fat pad
9
progenitor cell of endocrine pancreas
8
Ammon's horn
8
body of pancreas
8
cardiomyocytes (cardiac muscle cell)
8
cerebellum
7
ascending aorta
7
embryonic stem cell
7
stomach
7
substantia nigra
6
adrenal gland
6
amygdala
6
anterior cingulate cortex
6
brain
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
dendritic cell
6
hypothalamus
6
nucleus accumbens
6
retinal pigment epithelial cell
6
spleen
5
C1 segment of cervical spinal cord
5
SGBS preadipocytes
5
chondrocyte
5
gastrocnemius medialis(Muscle - Skeletal)
5
heart right ventricle
5
left ventricle myocardium
5
ovary
5
pancreatic ductal cell
5
psoas muscle
5
right lobe of liver
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
bone tissue
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
occipital lobe
4
small intestine
4
thymus
4
uterus
4
visceral abdominal adipose tissue
3
aorta
3
dorsolateral prefrontal cortex
3
globus pallidus
3
hepatocyte(AFP)
3
left cardiac atrium
3
lung
3
medulla oblongata
3
midbrain
3
muscle of leg
3
placenta
3
pons
3
renal pelvis
3
sigmoid colon
3
skeletal muscle tissue
3
skin of body
3
spinal cord
3
superior temporal gyrus
3
testis
3
thyroid gland
3
transverse colon
2
hindlimb muscle
2
muscle of leg
2
B cell
2
adipose-derived stem cell
2
bipolar neuron
2
blood
2
breast epithelium
2
cortex of kidney
2
differentiating adipose-derived stem cell
2
endothelial cell
2
esophagus
2
esophagus muscularis mucosa
2
excitatory neuron
2
gastrocnemius medialis
2
hematopoietic multipotent progenitor cell
2
hippocampal neuron
2
large intestine
2
left renal cortex interstitium
2
left renal pelvis
2
lower motor neuron
2
lymphocyte of B lineage (iPSC)
2
mesenchymal stem cell
2
mesendoderm
2
middle frontal gyrus
2
minor salivary gland
2
muscle of arm
2
neuronal stem cell
2
pancreatic stellate cell
2
prostate gland
2
renal cortex interstitium
2
right cardiac atrium
2
right kidney
2
right renal cortex interstitium
2
right renal pelvis
2
thoracic aorta
2
tissue
2
trophoblast
2
vagina
1
left kidney
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
CD4-positive helper T cell
1
CD8-positive, alpha-beta T cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Pancreatic islets
1
Peyer's patch
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
T cell
1
abdominal aorta artery
1
aorta wall
1
aortic valve
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
cardiac fibroblast
1
cardiac muscle cell
1
cardiac muscle cell (pacemaker cell)
1
cardiac precursors
1
cardiac ventricle
1
cerebellar cortex
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
chorion membrane
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
cortex
1
crypt of Lieberkuhn
1
dermis microvascular lymphatic vessel endothelial cell
1
diencephalon
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
embryonic facial prominence
1
erythroid cell
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
esophagus squamous epithelium
1
eye
1
fallopian tube
1
fetal heart
1
forelimb muscle
1
foreskin keratinocyte
1
foreskin melanocyte
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
iPS DF 4.7 Cell Line
1
inferior parietal cortex
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
kidney - cortex
1
kidney - medulla
1
layer of hippocampus
1
limb
1
mammary gland epithelial cell
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
metanephros
1
mitral valve
1
muscle of trunk
1
myocyte
1
myotube
1
natural killer cell
1
nephron tubule
1
neuron cell of Hypothalamus (neuron)
Organ
2
kidney
Life stage
2
embryonic
Date released
2
May, 2020
Software used
1
deltasvm
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type_category!
ChIP-seq
Showing 2 of 2 results
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Download
FileSet
DSR642JOJ
released
Annotation file set
: Variant allelic effects of right renal cortex interstitium ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR310MSD
released
Annotation file set
: Accessible chromatin of right renal cortex interstitium ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP