Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
3
accessible chromatin
1
eQTL
Annotation Category
4
Target gene links
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
ChIP-seq
40
DNase-seq
3
ATAC-seq
2
snATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
Available data
7
bed bed3+
2
bigWig
File set status
8
released
Genome assembly (visualization)
7
hg19
5
GRCh38
Organism
8
Homo sapiens
Biosample type
4
primary cell
4
tissue
Biosample term
4
small intestine
2
enterocyte of epithelium of small intestine
2
small intestine goblet cell
Organ
349
epithelium
160
pancreas
157
connective tissue
81
kidney
79
embryo
78
brain
59
vasculature
58
uterus
57
heart
57
musculature of body
45
intestine
44
blood
44
blood vessel
44
bodily fluid
34
liver
30
limb
skin of body
25
lung
23
large intestine
20
artery
20
eye
18
stomach
17
bone element
16
adipose tissue
16
adrenal gland
13
extraembryonic component
13
mammary gland
12
esophagus
11
gonad
11
pituitary gland
9
lymph node
9
prostate gland
8
skeleton
8
small intestine
7
ureter
6
ovary
6
placenta
6
thyroid gland
5
bronchus
5
lymphatic vessel
5
spleen
5
thymus
5
vein
4
bone marrow
4
nerve
4
penis
4
spinal cord
4
testis
3
breast
3
lymphoid tissue
2
mouth
2
urinary bladder
1
nose
1
pericardium
1
tongue
1
trachea
1
vagina
Date released
4
November, 2021
1
January, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
abc
3
macs
1
nospecificsoft_customcode
1
qTLtools
Lab
4
Bing Ren, UCSD
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
4
ENCODE
RFA
4
AMP
4
ENCODE3
annotation_type_category!
ChIP-seq
organ_slims!
skin of body
relevant_life_stage!
adult
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR654RQI
released
Annotation file set
: small intestine eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR392SPL
released
Annotation file set
: Target gene predictions of Small Intestinal Goblet Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR802OCO
released
Annotation file set
: Target gene predictions of Small Intestinal Enterocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR459YTN
released
Annotation file set
: Accessible chromatin annotation of Small Intestinal Goblet Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR273VIV
released
Annotation file set
: Accessible chromatin annotation of Small Intestinal Enterocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR515WUM
released
Annotation file set
: enhancer-gene predicton of small_intestine_fetal-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR074FIF
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Intestine, Small from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR466XKB
released
Annotation file set
: A target gene prediction annotation in Human Small Bowel of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP