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Schema
Citing CMDGA
Clear Filters
Annotation type
3
chromatin state
1
binding sites
1
eQTL
1
gene expression
1
histone modifications
1
target gene predictions
Annotation Category
5
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
11
ChIP-seq
DNase-seq
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
4
bed bed3+
3
bed bed9
1
bigBed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
4
in vitro differentiated cells
3
primary cell
1
stem cell
Biosample term
126
monocyte
55
HeLa-S3
50
H1-hESC
43
islet of Langerhans
42
neural progenitor cell
38
CD8-positive, alpha-beta T cell
34
kidney
28
heart
28
retina
27
liver
26
K562
26
hepatocyte
25
brain
23
EndoC_BH1
endothelial cell
22
stomach
21
A549
20
breast cancer cell
20
pigmented layer of retina
19
HFFc6
19
lung
19
subcutaneous adipose tissue
18
embryonic stem cell
18
epithelial cell of proximal tubule
18
placenta
17
adipose tissue
17
pancreatic ductal cell
17
small intestine
16
adrenal gland
15
B cell
15
glomerular endothelial cell
15
induced pluripotent stem cell
15
muscle of arm
15
muscle of leg
15
regulatory T cell
14
endothelial cell of hepatic sinusoid
14
heart left ventricle
14
thymus
13
large intestine
13
muscle of back
12
HepG2
12
T-helper 1 cell
12
T-helper 17 cell
12
adipocyte
12
common myeloid progenitor, CD34-positive
12
coronary artery
12
hematopoietic multipotent progenitor cell
12
keratinocyte
12
left lung
12
macrophage
12
neuroblastoma cell
tibial nerve
11
GM12878
11
lymphoblastoid cell line
10
MCF-7
10
gastric cancer cell
10
progenitor cell of endocrine pancreas
10
right atrium auricular region
10
right lung
10
spinal cord
10
substantia nigra
9
CD4-positive, alpha-beta memory T cell
9
Rhabdomyosarcoma
9
cardiomyocytes
9
caudate nucleus
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
omental fat pad
9
osteoblast
9
spleen
9
tibial artery
8
B-lymphoblastoid cell line
8
cerebellum
8
fibroblast cell line
8
frontal cortex
8
natural killer cell
8
neutrophil
8
pancreatic acinar cell
8
renal pelvis
8
right kidney
8
smooth muscle cell
7
Ammon's horn
7
CD8-positive, alpha-beta memory T cell
7
H9
7
T-helper 2 cell
7
amygdala
7
aorta
7
ascending aorta
7
body of pancreas
7
cardiomyocytes (cardiac muscle cell)
7
endothelial cell of umbilical vein
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
glomerular visceral epithelial cell
7
left kidney
7
lymphocyte
7
mature neutrophil
7
pancreas
7
pancreatic beta cell
7
pericyte cell
7
putamen
7
retinal pigment epithelial cell
7
temporal lobe
6
CD4-positive, alpha-beta T cell
6
Chondroid Chordoma
6
anterior cingulate cortex
6
cardiac muscle cell
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
fibroblast
6
fibroblast of cardiac tissue
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
left cardiac atrium
6
mammary gland epithelial cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
pancreatic alpha cell
6
renal cortex interstitium
6
skeletal muscle myoblast
6
skeletal muscle tissue
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM19238
5
GM19239
5
GM19240
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Monocyte
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Proximal Tubule Epithelial Cell Segment 3
5
Renin-positive Juxtaglomerular Granular Cell
5
foreskin fibroblast
5
heart right ventricle
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mammary epithelial cell
5
mesenchymal stem cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
osteosarcoma
5
pancreatic stellate cell
5
prostate cancer cell line
5
prostate gland
5
psoas muscle
5
skeletal muscle satellite cell
5
testis
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
CD14-positive monocyte
4
CD4-positive helper T cell
Organ
8
connective tissue
Life stage
2
adult
1
embryonic
Date released
2
February, 2021
2
February, 2024
2
September, 2022
1
March, 2020
1
October, 2019
Software used
3
chromhmm
2
macs
1
deeptools
1
nospecificsoft_customcode
1
qTLtools
1
r
1
samtools
1
umitools
Lab
6
AMP-T2D consortium
2
Stephen Parker, UMich
Project
8
AMP
RFA
6
AMP
2
AMP2
annotation_type_category!
DNase-seq
snATAC-seq
biosample_term_name!
endothelial cell
tibial nerve
Showing 8 of 8 results
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Download
FileSet
DSR073XBJ
released
Annotation file set
: Chromatin states for BSS01261 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625MZJ
released
Annotation file set
: Chromatin states for BSS01260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337GCY
released
Annotation file set
: Histone modifications annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR959CJP
released
Annotation file set
: Binding sites annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP