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Schema
Citing CMDGA
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Annotation type
1
gene expression
1
histone modifications
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
DNase-seq
60
ChIP-seq
2
ATAC-seq
2
H3K27ac ChIP-Seq
1
RNA-seq
Available data
1
bed bed3+
1
tsv
File set status
2
released
Genome assembly (visualization)
20
hg19
GRCh38
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
39
CD8-positive, alpha-beta T cell
36
islet of Langerhans
28
monocyte
24
retina
22
EndoC_BH1
22
endothelial cell
20
breast cancer cell
20
pigmented layer of retina
18
embryonic stem cell
17
epithelial cell of proximal tubule
17
pancreatic ductal cell
16
liver
15
induced pluripotent stem cell
14
glomerular endothelial cell
14
neural progenitor cell
14
pancreatic alpha cell
13
adipocyte
13
pancreatic beta cell
13
pancreatic delta cell
12
H1-hESC
12
neuroblastoma cell
12
regulatory T cell
11
adipose tissue
10
cardiomyocytes
10
diffuse intrinsic pontine glioma
gastric cancer cell
10
kidney
10
progenitor cell of endocrine pancreas
10
subcutaneous adipose tissue
9
Rhabdomyosarcoma
9
T-helper 1 cell
9
T-helper 17 cell
9
hepatocyte
9
liposarcoma
9
macrophage
9
pancreatic acinar cell
8
B cell
8
B-lymphoblastoid cell line
8
T-cell acute lymphoblastic leukemia
8
cardiomyocytes (cardiac muscle cell)
8
fibroblast
8
fibroblast cell line
7
chondrocyte
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
mature neutrophil
6
Chondroid Chordoma
6
HepG2
6
acute myeloid leukemia
6
cardiac muscle cell
6
cardiac precursors (cardiac muscle cell)
6
glomerular visceral epithelial cell
6
hESC cell
6
keratinocyte
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
natural killer cell
6
neuroblastoma cell line
6
neutrophil
6
pancreatic stellate cell
6
retinal pigment epithelial cell
6
smooth muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
MCF-7
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
SGBS preadipocytes
5
T Cell
5
T-helper 2 cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
alternatively activated macrophage
5
brain
5
cartilage tissue
5
central memory CD8-positive, alpha-beta T cell
5
heart
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mammary epithelial cell
5
memory B cell
5
mesenchymal stem cell
5
osteosarcoma
5
prostate cancer cell line
5
type I muscle cell
4
GM12878
4
HS-SY-2 cell
4
Jurkat
4
K562
4
Mantle cell lymphoma
4
RS4-11 cell
4
Rh-4 cell
4
T cell
4
T follicular helper cell
4
Th1 cell
4
adipose-derived stem cell
4
bone tissue
4
colon adenocarcinoma
4
dermal fibroblast
4
diffuse large B-cell lymphoma
4
effector memory CD8-positive, alpha-beta T cell
4
erythroblast
4
esophageal squamous cell carcinoma
4
foreskin fibroblast
4
gamma-delta T cell
4
heart left ventricle
4
mast cell
4
naive B cell
4
nephron progenitor
4
neuronal stem cell
4
osteoblast
4
plasma cell
4
skeletal muscle fiber
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
3
A549
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
B-lymphocyte
3
BE(2)-C
3
BJ cell
3
COLO-320 cell
3
COLO205
3
Caco-2 cell
3
Cycling Mononuclear Phagocyte
3
DND-41 cell
3
GM06990
3
GM10847
3
GM12864
3
GM12865
3
GM12872
3
GM12873
3
GM12875
3
GM12891
3
GM12892
3
GM18505
3
GM18526
3
GM18951
3
GM19099
3
GM19193
3
GM19238
3
GM19239
3
GM19240
3
HAC cell
Organ
2
stomach
Life stage
1
adult
Date released
1
February, 2021
1
March, 2024
Software used
1
macs
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type_category!
DNase-seq
assembly!
GRCh38
biosample_term_name!
gastric cancer cell
month_released!
January, 2022
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR007TCR
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Stomach.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR497XLY
released
Annotation file set
: Histone modifications annotation for Digestive tract Gastric_primary_sample from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP