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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
3
cis-regulatory elements
Annotation type Category
5
ChIP-seq
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
24
kidney
22
heart
20
A549
20
brain
20
breast cancer cell
20
stomach
17
placenta
16
lung
15
epithelial cell of proximal tubule
15
muscle of arm
15
small intestine
14
adrenal gland
14
large intestine
13
common myeloid progenitor, CD34-positive
13
glomerular endothelial cell
13
left lung
13
muscle of back
13
muscle of leg
12
hematopoietic multipotent progenitor cell
12
neuroblastoma cell
11
cardiomyocytes
11
gastric cancer cell
11
thymus
10
B cell
10
adipose tissue
10
diffuse intrinsic pontine glioma
10
right lung
9
CD4-positive, alpha-beta memory T cell
9
MCF-7
9
Rhabdomyosarcoma
9
keratinocyte
9
liposarcoma
9
liver
8
HepG2
8
K562
8
T-cell acute lymphoblastic leukemia
8
esophageal adenocarcinoma
8
induced pluripotent stem cell
8
left kidney
8
renal pelvis
8
right kidney
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
endothelial cell
7
fibroblast cell line
7
hESC cell
7
hepatocyte
7
neural progenitor cell
7
spinal cord
6
Chondroid Chordoma
6
acute myeloid leukemia
6
bronchial epithelial cell
6
fibroblast of cardiac tissue
6
heart left ventricle
6
kidney interstitial cell
6
kidney loop of Henle thin ascending limb epithelial cell
6
neuroblastoma cell line
6
renal cortex interstitium
6
spleen
5
Ewing sarcoma
5
T cell
5
adipocyte
5
cardiac muscle cell
5
diffuse large B-cell lymphoma
5
embryonic stem cell
5
esophageal squamous cell carcinoma
5
foreskin fibroblast
5
foreskin keratinocyte
5
glioblastoma multiforme cancer stem cell
5
mammary epithelial cell
5
mammary gland epithelial cell
5
mononuclear cell
5
osteoblast
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
4
22Rv1
4
CD14-positive monocyte
4
HS-SY-2 cell
4
Jurkat
4
Mantle cell lymphoma
4
NAMALWA cell
4
RS4-11 cell
4
Rh-4 cell
4
Th1 cell
4
Tumor-derived cell line
4
aortic endothelial cell
4
bone tissue
4
caudate nucleus
4
chorionic villus
4
colon adenocarcinoma
4
dermal fibroblast
4
dermis lymphatic vessel endothelial cell
4
endodermal cell
4
epithelial cell of prostate
4
erythroid progenitor cell
4
gastrocnemius medialis
4
glioblastoma cell
4
glioma cell
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
immortal neural cell line cell
4
kidney cortex collecting duct principal cell
4
kidney loop of Henle thick ascending limb epithelial cell
4
lymphoblastoid cell line
4
melanoma
4
natural killer cell
4
nephron progenitor
4
neuronal stem cell
4
retina
4
skeletal muscle myoblast
4
skeletal muscle tissue
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
4
upper lobe of left lung
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
B-lymphocyte
3
BE(2)-C
3
BJ cell
3
CD1c-positive myeloid dendritic cell
3
CMK
3
COLO-320 cell
3
COLO205
3
Caco-2 cell
3
GM06990
3
GM12864
3
GM12865
3
GM12875
3
GM12878
3
GM12891
3
GM12892
3
GM19238
3
GM19239
3
GM19240
3
GM23248
3
H1-hESC
3
HAP-1
3
HEK293
3
HK-2 cell
3
HL-60
3
HT-29
3
HeLa-S3
3
HuH-7
3
IMR-90
3
KARPAS-422 cell
3
LHCN-M2
3
LoVo cell
3
MG63
3
MM.1S
3
NT2-D1 cell
3
OCI-LY1
3
OCI-LY7
3
PC-3
3
PC-9
3
Peyer's patch
3
RPMI8226
3
RWPE1
3
S-shaped body
3
SK-N-DZ
3
SK-N-MC
3
SW480
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
VCaP cell
3
WERI-Rb-1
3
adult endothelial progenitor cell
3
ascending aorta
3
cardiac precursors (cardiac muscle cell)
3
cerebellum
3
chorion membrane
3
choroid plexus epithelial cell
3
chronic lymphocytic leukemia cell
3
colonic mucosa
3
endometrium adenocarcinoma
3
endothelial cell of umbilical vein
3
epithelial ovarian cancer cell
3
fibroblast
3
fibroblast of dermis
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
hematopoietic cell
3
immortal human breast epithelial cell line cell
3
kidney cortex collecting duct intercalated cell
3
kidney distal convoluted tubule epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
layer of hippocampus
3
leukemic stem cell
3
melanoma cell
3
midbrain
3
mononuclear cell of bone marrow
3
muscle of trunk
Organ
3
embryo
Life stage
1
embryonic
Date released
37
February, 2024
8
August, 2021
2
February, 2021
1
August, 2017
1
October, 2022
1
September, 2022
Software used
2
macs
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type_category!
DNase-seq
organ_slims!
pancreas
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP