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Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
4
cell line
2
in vitro differentiated cells
2
primary cell
Biosample term
128
monocyte
41
CD8-positive, alpha-beta T cell
39
endothelial cell
29
fibroblast
28
macrophage
27
hepatocyte
20
pericyte cell
20
smooth muscle cell
18
epithelial cell of proximal tubule
18
regulatory T cell
17
B cell
17
pancreatic beta cell
17
pancreatic ductal cell
16
endothelial cell of hepatic sinusoid
16
pancreatic alpha cell
15
glomerular endothelial cell
15
pancreatic acinar cell
15
pancreatic delta cell
14
T cell
13
T-helper 1 cell
13
T-helper 17 cell
13
astrocyte
13
common myeloid progenitor, CD34-positive
12
excitatory neuron
11
keratinocyte
11
natural killer cell
10
erythroblast
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
osteoblast
10
skeletal muscle satellite cell
9
CD4-positive, alpha-beta memory T cell
9
T-helper 2 cell
9
mature neutrophil
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
neutrophil
9
skeletal muscle fiber
8
endothelial cell of umbilical vein
8
glutamatergic neuron
8
mammary epithelial cell
8
pancreatic stellate cell
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
foreskin fibroblast
7
glomerular visceral epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mammary gland epithelial cell
7
mesangial cell
7
mononuclear cell
7
skeletal muscle myoblast
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
alternatively activated macrophage
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
fibroblast of cardiac tissue
6
fibroblast of lung
6
gamma-delta T cell
6
mast cell
6
mesenchymal stem cell
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
plasma cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
bronchial epithelial cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
luminal epithelial cell of mammary gland
5
myofibroblast cell
5
pancreatic endothelial cell
5
retinal pigment epithelial cell
5
trophoblast cell
4
CD14-positive monocyte
4
activated CD4-positive, alpha-beta T cell
4
adipocyte
4
adult endothelial progenitor cell
4
aortic endothelial cell
4
blood vessel smooth muscle cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of dermis
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of villous mesenchyme
4
foreskin keratinocyte
4
hepatic stellate cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
skin fibroblast
4
smooth muscle cell of the esophagus
4
tracheal epithelial cell
4
type I pneumocyte
4
vascular associated smooth muscle cell
3
CD1c-positive myeloid dendritic cell
3
CD4-positive helper T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
activated CD8-positive, alpha-beta T cell
3
aortic adventitial fibroblast
3
blood cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
epithelial cell of esophagus
3
glial cell
3
goblet cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
meso-epithelial cell
Date released
1
February, 2024
1
October, 2022
Software used
1
chromhmm
1
deltasvm
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
AMP
RFA
2
AMP
annotation_type_category!
DNase-seq
biosample_term_name!
fibroblast of the aortic adventitia
files.file_type!
bed gappedPeak
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR073XYT
released
Annotation file set
: Binding sites annotation for cardiac muscle cell (HCM) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR731EZG
released
Annotation file set
: Variant allelic effects annotation of Cardiomyocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP