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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
chromatin state
1
binding sites
Annotation Category
4
cis-regulatory elements
Annotation type Category
11
ChIP-seq
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
tsv
3
bed bed9
1
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
113
monocyte
55
HeLa-S3
42
H1-hESC
38
CD8-positive, alpha-beta T cell
35
endothelial cell
35
fibroblast
35
neural progenitor cell
33
islet of Langerhans
31
macrophage
27
kidney
26
K562
26
retina
25
heart
25
liver
24
brain
23
smooth muscle cell
22
pericyte cell
21
A549
21
stomach
20
B cell
20
breast cancer cell
20
hepatocyte
20
pigmented layer of retina
19
HFFc6
18
lung
18
placenta
17
adipocyte
17
embryonic stem cell
17
small intestine
16
adrenal gland
15
T cell
15
adipose tissue
15
keratinocyte
15
muscle of arm
15
muscle of leg
14
EndoC_BH1
14
thymus
13
heart left ventricle
13
large intestine
13
muscle of back
13
pancreatic beta cell
13
pancreatic ductal cell
12
HepG2
12
common myeloid progenitor, CD34-positive
12
excitatory neuron
12
left lung
12
natural killer cell
12
neuroblastoma cell
11
GM12878
11
astrocyte
11
endothelial cell of hepatic sinusoid
11
hematopoietic multipotent progenitor cell
11
lymphoblastoid cell line
11
pancreatic acinar cell
11
pancreatic alpha cell
11
pancreatic delta cell
10
MCF-7
10
gastric cancer cell
10
mesenchymal stem cell
10
regulatory T cell
10
right lung
10
skeletal muscle satellite cell
10
spinal cord
9
CD4-positive, alpha-beta memory T cell
9
Rhabdomyosarcoma
9
diffuse intrinsic pontine glioma
9
erythroblast
9
liposarcoma
9
retinal pigment epithelial cell
8
B-lymphoblastoid cell line
8
fibroblast cell line
8
neutrophil
8
renal pelvis
8
right kidney
8
skeletal muscle fiber
8
spleen
8
subcutaneous adipose tissue
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
H9
7
T-cell acute lymphoblastic leukemia
7
cardiac muscle cell
7
coronary artery
7
endothelial cell of umbilical vein
7
esophageal adenocarcinoma
7
fibroblast of cardiac tissue
7
left kidney
7
lymphocyte
7
mammary gland epithelial cell
7
mast cell
7
mature neutrophil
7
pancreas
6
Chondroid Chordoma
6
acute myeloid leukemia
6
chondrocyte
6
colon epithelial cell
6
hESC cell
6
iPSC derived cell line
6
induced pluripotent stem cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neuroblastoma cell line
6
neuronal stem cell
6
osteoblast
6
renal cortex interstitium
6
skeletal muscle myoblast
6
type I muscle cell
5
CD14-positive, CD16-negative classical monocyte
5
CyT49
5
Ewing sarcoma
5
GM19238
5
GM19239
5
GM19240
5
HUES8
5
SGBS preadipocytes
5
T-helper 1 cell
5
T-helper 17 cell
5
T-helper 2 cell
5
aorta
5
endothelial cell of lymphatic vessel
5
enterocyte
5
foreskin fibroblast
5
glutamatergic neuron
5
mammary epithelial cell
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
psoas muscle
5
skeletal muscle tissue
5
smooth muscle cell of the coronary artery
5
temporal lobe
5
tibial nerve
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
CD14-positive monocyte
4
CD4-positive helper T cell
4
Caco-2 cell
4
GM06990
4
GM12864
4
GM12865
4
GM12875
4
GM12891
4
GM12892
4
GM18505
4
GM19099
4
GM19193
4
HEK293
4
HL-60
4
HS-SY-2 cell
4
IMR-90
4
Jurkat
4
KARPAS-422 cell
4
Mantle cell lymphoma
4
NAMALWA cell
4
NT2-D1 cell
4
RS4-11 cell
4
Rh-4 cell
4
SK-N-MC
4
Th1 cell
4
adipose-derived stem cell
4
alternatively activated macrophage
4
aortic endothelial cell
4
basal cell
4
bronchial epithelial cell
4
cartilage tissue
4
caudate nucleus
4
choroid plexus epithelial cell
4
cortical cell of adrenal gland
4
diffuse large B-cell lymphoma
4
endodermal cell
4
epithelial cell of prostate
4
esophageal squamous cell carcinoma
4
fibroblast of lung
4
fibroblast of villous mesenchyme
4
foreskin keratinocyte
4
heart right ventricle
4
layer of hippocampus
4
left cardiac atrium
4
memory B cell
4
mononuclear cell
4
myofibroblast cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
pancreatic stellate cell
4
plasma cell
4
putamen
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tibial artery
4
tracheal epithelial cell
4
triple-negative breast cancer
4
trophoblast
4
type II muscle cell
4
upper lobe of left lung
3
B-lymphocyte
3
CD1c-positive myeloid dendritic cell
Organ
4
connective tissue
4
skin of body
Life stage
2
unknown
1
adult
Date released
3
September, 2022
1
October, 2022
Software used
4
chromhmm
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type_category!
DNase-seq
files.file_type!
tsv
organ_slims!
mouth
Showing 4 of 4 results
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Download
FileSet
DSR441OMK
released
Annotation file set
: Binding sites annotation for fibroblast of dermis (NHDF-Ad) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR015YPE
released
Annotation file set
: Chromatin states for BSS00337 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR100UEK
released
Annotation file set
: Chromatin states for BSS00335 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR175FVS
released
Annotation file set
: Chromatin states for BSS00334 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP