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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
chromatin state
1
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
10
ChIP-seq
DNase-seq
Available data
2
bed bed3+
2
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
islet of Langerhans
34
kidney
28
heart
28
retina
27
liver
25
brain
22
stomach
20
pigmented layer of retina
19
lung
19
subcutaneous adipose tissue
18
adipose tissue
18
placenta
17
adrenal gland
17
small intestine
16
muscle of arm
15
heart left ventricle
15
muscle of leg
15
thymus
14
large intestine
13
coronary artery
13
left lung
13
muscle of back
13
tibial nerve
11
caudate nucleus
11
right atrium auricular region
11
right lung
11
spleen
11
substantia nigra
11
tibial artery
10
body of pancreas
10
cerebellum
10
omental fat pad
10
right kidney
9
frontal cortex
9
left kidney
9
pancreas
9
putamen
9
renal cortex interstitium
9
renal pelvis
8
ascending aorta
8
heart right ventricle
7
Ammon's horn
7
amygdala
7
aorta
7
hypothalamus
7
layer of hippocampus
7
left cardiac atrium
7
nucleus accumbens
7
ovary
7
prostate gland
7
psoas muscle
7
skeletal muscle tissue
7
temporal lobe
7
testis
6
anterior cingulate cortex
6
right lobe of liver
6
sigmoid colon
5
cartilage tissue
5
cerebellum (Hemisphere)
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
right cardiac atrium
5
thoracic aorta
5
thyroid gland
5
transverse colon
5
upper lobe of left lung
4
angular gyrus
4
bone tissue
4
chorionic villus
4
colonic mucosa
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
esophagus
4
gastrocnemius medialis
4
muscle of trunk
4
skin of body
4
trophoblast
4
vagina
4
visceral abdominal adipose tissue
3
Peyer's patch
3
chorion membrane
3
cingulate gyrus
3
cortex of kidney
3
dorsolateral prefrontal cortex
3
duodenal mucosa
3
esophagus muscularis mucosa
3
midbrain
3
mucosa of rectum
3
occipital lobe
3
stomach smooth muscle
3
uterus
2
Brodmann (1909) area 46
2
blood
2
breast carcinoma
2
breast epithelium
2
endometrium cancer
2
esophagus squamous epithelium
2
eye
2
fallopian tube
2
first pancreatic bud
2
germinal matrix
2
globus pallidus
2
kidney epithelium
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
mammary gland
2
minor salivary gland
2
muscle layer of colon
2
muscle layer of duodenum
2
pancreatic ductal cell
2
pancreatic stellate cell
2
parathyroid adenoma
2
pituitary gland
2
prefrontal cortex
2
rectum smooth muscle tissue
2
respiratory system smooth muscle
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle
2
skin of forearm
2
skin of prepuce of penis
2
superior temporal gyrus
2
tissue
2
tongue
2
umbilical cord
2
urinary bladder
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
amnion
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic valve
1
arcuate nucleus of hypothalamus
1
arm bone
1
bed nucleus of stria terminalis
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
caput epididymis
1
cardiogenic mesoderm
1
cerebellar cortex
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
cortex
1
dentate nucleus
1
diencephalon
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dura mater
1
embryonic facial prominence
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
femur
1
frontal pole
1
gastric (mucosa of stomach)
1
gastroesophageal sphincter
1
germinal center
1
gyrus rectus
1
inferior parietal cortex
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulla oblongata
1
medulloblastoma
1
metanephros
1
mid-frontal lobe
1
middle frontal gyrus
1
mitral valve
1
morula
1
mucosa of stomach
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
Organ
4
intestine
4
large intestine
Life stage
2
adult
Date released
2
September, 2022
1
August, 2017
1
February, 2021
Software used
3
chromhmm
1
macs
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
4
AMP
annotation_type_category!
DNase-seq
biosample_term_name!
islet of Langerhans
organ_slims!
spinal cord
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR663ZTW
released
Annotation file set
: Chromatin states for BSS00228 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR230SUN
released
Annotation file set
: Chromatin states for BSS00227 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR128RIZ
released
Annotation file set
: Histone modifications annotation for Digestive tract Colonic_mucosa from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR420347
released
Annotation file set
: ChromHMM 13-state model for Colonic mucosa
Lab:
Stephen Parker, UMich
Project:
AMP