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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
chromatin state
1
accessible chromatin
1
binding sites
1
caQTL
1
histone modifications
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
11
ChIP-seq
DNase-seq
2
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
3
bed bed9
1
bigBed bed9
1
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
4
in vitro differentiated cells
3
primary cell
1
stem cell
Biosample term
128
monocyte
43
islet of Langerhans
42
neural progenitor cell
41
CD8-positive, alpha-beta T cell
38
endothelial cell
34
kidney
30
macrophage
28
fibroblast
28
heart
28
retina
26
liver
25
brain
23
EndoC_BH1
22
B cell
22
pericyte cell
22
stomach
21
A549
20
breast cancer cell
19
lung
19
pigmented layer of retina
19
smooth muscle cell
18
embryonic stem cell
18
epithelial cell of proximal tubule
18
hepatocyte
18
placenta
18
subcutaneous adipose tissue
17
adipose tissue
17
small intestine
16
adrenal gland
16
pancreatic alpha cell
16
pancreatic beta cell
15
glomerular endothelial cell
15
induced pluripotent stem cell
15
muscle of arm
15
muscle of leg
15
pancreatic ductal cell
14
heart left ventricle
14
natural killer cell
14
thymus
13
H1-hESC
13
adipocyte
13
keratinocyte
13
large intestine
13
muscle of back
13
pancreatic acinar cell
13
pancreatic delta cell
13
regulatory T cell
12
HepG2
12
T cell
12
common myeloid progenitor, CD34-positive
12
coronary artery
12
excitatory neuron
12
hematopoietic multipotent progenitor cell
12
left lung
12
neuroblastoma cell
12
tibial nerve
11
astrocyte
11
lymphoblastoid cell line
10
K562
10
MCF-7
10
gastric cancer cell
10
right atrium auricular region
10
right lung
10
spinal cord
10
substantia nigra
9
CD4-positive, alpha-beta memory T cell
9
Rhabdomyosarcoma
9
cardiomyocytes
9
caudate nucleus
9
diffuse intrinsic pontine glioma
9
erythroblast
9
liposarcoma
9
omental fat pad
9
osteoblast
9
retinal pigment epithelial cell
9
spleen
9
tibial artery
8
B-lymphoblastoid cell line
8
cerebellum
8
fibroblast cell line
8
frontal cortex
8
neutrophil
8
renal pelvis
8
right kidney
7
Ammon's horn
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
amygdala
7
aorta
7
ascending aorta
7
body of pancreas
7
cardiomyocytes (cardiac muscle cell)
7
endothelial cell of umbilical vein
7
esophageal adenocarcinoma
7
fibroblast of cardiac tissue
7
glomerular visceral epithelial cell
7
left kidney
7
mast cell
7
mature neutrophil
7
pancreas
7
putamen
7
skeletal muscle satellite cell
7
temporal lobe
6
Chondroid Chordoma
6
T-helper 17 cell
6
anterior cingulate cortex
6
cardiac muscle cell
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
colon epithelial cell
6
hESC cell
6
hypothalamus
6
mammary gland epithelial cell
6
memory B cell
6
mesenchymal stem cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neuroblastoma cell line
6
neuronal stem cell
6
nucleus accumbens
6
pancreatic stellate cell
6
plasma cell
6
renal cortex interstitium
6
skeletal muscle myoblast
6
skeletal muscle tissue
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM12878
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Monocyte
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Proximal Tubule Epithelial Cell Segment 3
5
T-helper 1 cell
5
T-helper 2 cell
5
endothelial cell of lymphatic vessel
5
foreskin fibroblast
5
glutamatergic neuron
5
heart right ventricle
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mammary epithelial cell
5
mesangial cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
psoas muscle
5
smooth muscle cell of the coronary artery
5
testis
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
CD14-positive monocyte
4
Caco-2 cell
4
GM06990
Organ
8
connective tissue
Life stage
2
adult
1
embryonic
1
unknown
Date released
February, 2024
2
February, 2021
2
September, 2022
1
March, 2020
1
May, 2022
1
October, 2019
1
October, 2022
Software used
3
chromhmm
3
macs
1
eigenmt
1
nospecificsoft_customcode
1
rasqual
Lab
7
AMP-T2D consortium
1
Stephen Parker, UMich
Project
8
AMP
RFA
7
AMP
1
AMP2
annotation_type_category!
DNase-seq
biosample_term_name!
bronchial epithelial cell
thoracic aorta
month_released!
February, 2024
Showing 8 of 8 results
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Download
FileSet
DSR073XBJ
released
Annotation file set
: Chromatin states for BSS01261 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625MZJ
released
Annotation file set
: Chromatin states for BSS01260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337GCY
released
Annotation file set
: Histone modifications annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR959CJP
released
Annotation file set
: Binding sites annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP