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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
caQTL
1
chromatin state
1
eQTL
1
gene expression
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
1
Gene expression levels
Annotation type Category
2
ChIP-seq
2
snATAC-seq
DNase-seq
1
RNA-seq
1
snRNA-seq
Available data
4
bed bed3+
1
bed bed9
1
bigBed bed9
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
4
in vitro differentiated cells
1
stem cell
Biosample term
112
monocyte
37
CD8-positive, alpha-beta T cell
29
endothelial cell
20
macrophage
18
epithelial cell of proximal tubule
18
fibroblast
17
hepatocyte
15
glomerular endothelial cell
15
regulatory T cell
15
smooth muscle cell
14
B cell
13
common myeloid progenitor, CD34-positive
12
pancreatic ductal cell
12
pericyte cell
11
T-helper 1 cell
11
T-helper 17 cell
11
natural killer cell
10
endothelial cell of hepatic sinusoid
10
pancreatic delta cell
9
CD4-positive, alpha-beta memory T cell
9
T cell
9
keratinocyte
9
mature neutrophil
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neutrophil
9
pancreatic acinar cell
9
pancreatic alpha cell
9
pancreatic beta cell
8
endothelial cell of umbilical vein
8
mammary epithelial cell
8
mast cell
8
osteoblast
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
7
foreskin fibroblast
7
kidney loop of Henle thin ascending limb epithelial cell
7
mononuclear cell
7
skeletal muscle myoblast
6
CD4-positive, alpha-beta T cell
6
alternatively activated macrophage
6
fibroblast of lung
6
glomerular visceral epithelial cell
6
glutamatergic neuron
6
kidney interstitial cell
6
mammary gland epithelial cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
pancreatic stellate cell
6
skeletal muscle fiber
6
skeletal muscle satellite cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
adipocyte
5
astrocyte
5
bronchial epithelial cell
5
erythroblast
5
inflammatory macrophage
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
memory B cell
5
mesangial cell
5
mesenchymal stem cell
5
myofibroblast cell
5
trophoblast cell
5
type I muscle cell
5
type II muscle cell
4
CD14-positive monocyte
4
adult endothelial progenitor cell
4
endothelial cell of lymphatic vessel
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of villous mesenchyme
4
foreskin keratinocyte
4
gamma-delta T cell
4
hepatic stellate cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
nephron progenitor
4
neuronal stem cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
plasma cell
4
preadipocyte
4
retinal pigment epithelial cell
4
tracheal epithelial cell
4
vascular associated smooth muscle cell
3
CD1c-positive myeloid dendritic cell
3
CD4-positive helper T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
T follicular helper cell
3
activated CD4-positive, alpha-beta T cell
3
aortic adventitial fibroblast
3
basal cell
3
blood cell
3
central memory CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
effector memory CD8-positive, alpha-beta T cell
3
endocardial cell
3
enterocyte
3
epithelial cell of esophagus
3
gabaergic neuron
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
leukocyte
3
luminal epithelial cell of mammary gland
3
meso-epithelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cel
3
naive B cell
3
naive T cell
3
neurosphere
3
pancreatic polypeptide-secreting cell
3
pancreatic quiescent stellate cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary artery endothelial cell
3
renal epithelial cell
3
skin fibroblast
3
type II pneumocyte
2
Adipose stromal cell
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Ishikawa
2
Kupffer cell
2
Rhabdoid Tumor of the Kidney
2
Th1 cell
2
Th17 cell
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
aortic endothelial cell
2
articular chondrocyte
Organ
5
connective tissue
Life stage
1
adult
Date released
3
February, 2024
1
October, 2019
1
October, 2022
Software used
1
chromhmm
1
deeptools
1
eigenmt
1
macs
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
1
AMP-T2D consortium
Project
5
AMP
RFA
4
AMP2
1
AMP
annotation_type_category!
DNase-seq
files.file_type!
bigWig
Showing 5 of 5 results
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Download
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP