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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
binding sites
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
8
ChIP-seq
DNase-seq
3
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
7
bed bed3+
bed bed9
1
bigBed bed9
1
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
5
primary cell
2
in vitro differentiated cells
1
stem cell
Biosample term
128
monocyte
52
HeLa-S3
49
H1-hESC
44
islet of Langerhans
41
CD8-positive, alpha-beta T cell
41
endothelial cell
38
neural progenitor cell
32
fibroblast
30
macrophage
26
hepatocyte
25
retina
23
EndoC_BH1
23
pancreatic ductal cell
21
smooth muscle cell
20
K562
20
breast cancer cell
20
pigmented layer of retina
19
HFFc6
19
liver
19
pericyte cell
19
subcutaneous adipose tissue
18
kidney
18
pancreatic beta cell
17
epithelial cell of proximal tubule
17
pancreatic alpha cell
16
endothelial cell of hepatic sinusoid
16
pancreatic acinar cell
15
induced pluripotent stem cell
15
pancreatic delta cell
14
adipocyte
14
glomerular endothelial cell
14
regulatory T cell
13
excitatory neuron
13
keratinocyte
12
astrocyte
12
embryonic stem cell
12
neuroblastoma cell
11
B cell
11
HepG2
11
T cell
11
lymphoblastoid cell line
10
GM12878
10
T-helper 1 cell
10
adipose tissue
10
gastric cancer cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
9
Rhabdomyosarcoma
9
T-helper 17 cell
9
cardiomyocytes
9
coronary artery
9
diffuse intrinsic pontine glioma
9
erythroblast
9
liposarcoma
9
tibial nerve
8
B-lymphoblastoid cell line
8
fibroblast cell line
8
retinal pigment epithelial cell
8
right atrium auricular region
8
skeletal muscle fiber
7
CD4-positive, alpha-beta T cell
7
amygdala
7
brain
7
cardiomyocytes (cardiac muscle cell)
7
cerebellum
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
mature neutrophil
7
memory B cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
natural killer cell
7
osteoblast
7
skeletal muscle satellite cell
7
substantia nigra
6
Ammon's horn
6
Chondroid Chordoma
6
H9
6
T-cell acute lymphoblastic leukemia
6
T-helper 2 cell
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
caudate nucleus
6
chondrocyte
6
glomerular visceral epithelial cell
6
hESC cell
6
heart
6
heart left ventricle
6
hypothalamus
6
iPSC derived cell line
6
lymphocyte
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
neutrophil
6
nucleus accumbens
6
omental fat pad
6
plasma cell
6
putamen
6
tibial artery
6
type I muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
MCF-7
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
SGBS preadipocytes
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
body of pancreas
5
cardiac muscle cell
5
enterocyte
5
fibroblast of cardiac tissue
5
frontal cortex
5
glutamatergic neuron
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mammary epithelial cell
5
mammary gland epithelial cell
5
mast cell
5
mesangial cell
5
mesenchymal stem cell
5
osteosarcoma
5
prostate cancer cell line
5
smooth muscle cell of the coronary artery
4
CD4-positive helper T cell
4
GM18505
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
GM19240
4
HS-SY-2 cell
4
Jurkat
4
Mantle cell lymphoma
4
Principal Cell
4
Proximal Tubule Epithelial Cell Segment 1 and 2
4
Rh-4 cell
4
Schwann cell
4
Th1 cell
4
Vascular Smooth Muscle Cell / Pericyte
4
acute myeloid leukemia
4
aortic endothelial cell
4
cartilage tissue
4
colon epithelial cell
4
cortical cell of adrenal gland
4
diffuse large B-cell lymphoma
4
esophageal squamous cell carcinoma
4
foreskin fibroblast
4
gamma-delta T cell
Organ
8
connective tissue
Life stage
1
unknown
Date released
3
February, 2024
2
February, 2021
1
March, 2020
1
May, 2022
1
October, 2022
Software used
4
macs
1
deeptools
1
eigenmt
1
nospecificsoft_customcode
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
AMP-T2D consortium
4
Stephen Parker, UMich
Project
8
AMP
RFA
4
AMP
4
AMP2
annotation_type_category!
DNase-seq
files.file_type!
bed bed9
Showing 8 of 8 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337GCY
released
Annotation file set
: Histone modifications annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR959CJP
released
Annotation file set
: Binding sites annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP