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Citing CMDGA
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Annotation type
1
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
Annotation Category
2
Genetic variant effects
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
ATAC-seq
DNase-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
snRNA-seq
Available data
3
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
20
endothelial cell
15
fibroblast
15
smooth muscle cell
11
pericyte cell
10
endothelial cell of hepatic sinusoid
10
macrophage
9
adipocyte
8
kidney
7
induced pluripotent stem cell
7
pancreatic acinar cell
7
pancreatic delta cell
7
pancreatic ductal cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
skeletal muscle fiber
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
left cardiac atrium
5
mast cell
5
natural killer cell
5
pancreatic stellate cell
5
type I muscle cell
5
type II muscle cell
4
cartilage tissue
4
endothelial cell of lymphatic vessel
4
keratinocyte
4
mesenchymal stem cell
4
myofibroblast cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
3
B cell
3
CD4-positive helper T cell
3
CD8-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
T cell
3
basal cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endocardial cell
3
enterocyte
3
hepatocyte
3
islet of Langerhans
3
liver
3
pancreatic quiescent stellate cell
3
skeletal muscle satellite cell
3
subcutaneous adipose tissue
3
type II pneumocyte
2
ESC derived cell line
2
EndoC_BH1
2
Schwann cell
2
articular chondrocyte
2
astrocyte
2
blood vessel smooth muscle cell
2
dendritic cell
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
gabaergic neuron
2
glial cell
2
glutamatergic neuron
2
goblet cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
memory B cell
2
mesothelial cell
2
neural cell
2
neuronal stem cell
2
pancreatic A cell
2
parietal cell
2
peptic cell
2
regular ventricular cardiac myocyte
2
smooth muscle cell of the esophagus
2
thyroid follicular cell
2
type B pancreatic cell
2
vascular associated smooth muscle cell
1
B-1 B cell
1
B-2 B cell
1
CD34-PB
1
CD4-positive, alpha-beta T cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
GM12878
1
H1-hESC
1
HepG2
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
K562
1
Pancreatic islets
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Satellite Cells, Skeletal Muscle
1
T-helper 17 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
alternatively activated macrophage
1
alveolar macrophage
1
basal cell of epidermis
1
bronchial goblet cell
1
cardiac endothelial cell
1
cardiac muscle cell
1
caudate nucleus
1
cell
1
cholangiocyte
1
ciliated cell
1
cingulate gyrus
1
club cell
1
colon goblet cell
1
colonic mucosa
1
conventional dendritic cell
1
duodenal mucosa
1
eccrine cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of umbilical vein
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
epithelial cell of proximal tubule
1
erythrocyte
1
fat cell
1
fibroblast of cardiac tissue
1
fibroblast of lung
1
foveolar cell of stomach
1
glomerular endothelial cell
1
granular cell of epidermis
1
granulosa cell
1
hepatic stellate cell
1
inflammatory macrophage
1
intestinal tuft cell
1
kidney connecting tubule epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
layer of hippocampus
1
luminal epithelial cell of prostatic duct
1
luteal cell
1
lymphocyte of B lineage
1
mammary epithelial cell
1
mature NK T cell
Organ
4
connective tissue
Date released
3
February, 2024
1
October, 2022
Software used
1
deeptools
1
eigenmt
1
macs
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
AMP-T2D consortium
4
Stephen Parker, UMich
Project
4
AMP
RFA
4
AMP2
annotation_type_category!
DNase-seq
files.file_type!
bigWig
lab.title!
AMP-T2D consortium
Showing 4 of 4 results
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Download
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP