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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
6
ChIP-seq
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
stem cell
Biosample term
128
monocyte
55
HeLa-S3
50
H1-hESC
44
endothelial cell
44
islet of Langerhans
42
neural progenitor cell
41
CD8-positive, alpha-beta T cell
35
fibroblast
34
kidney
33
macrophage
29
hepatocyte
28
heart
28
retina
27
liver
26
K562
25
brain
24
smooth muscle cell
23
EndoC_BH1
23
pancreatic ductal cell
22
B cell
22
pericyte cell
22
stomach
21
A549
20
breast cancer cell
20
pigmented layer of retina
19
HFFc6
19
lung
19
subcutaneous adipose tissue
18
adipocyte
18
embryonic stem cell
18
epithelial cell of proximal tubule
18
pancreatic beta cell
18
placenta
18
regulatory T cell
17
adipose tissue
17
pancreatic alpha cell
17
small intestine
16
adrenal gland
16
endothelial cell of hepatic sinusoid
16
pancreatic acinar cell
15
glomerular endothelial cell
15
induced pluripotent stem cell
15
keratinocyte
15
muscle of arm
15
muscle of leg
15
pancreatic delta cell
14
T cell
14
heart left ventricle
14
natural killer cell
14
thymus
13
astrocyte
13
excitatory neuron
13
large intestine
13
muscle of back
12
HepG2
12
T-helper 1 cell
12
T-helper 17 cell
12
common myeloid progenitor, CD34-positive
12
coronary artery
12
hematopoietic multipotent progenitor cell
12
left lung
12
neuroblastoma cell
12
tibial nerve
11
GM12878
11
lymphoblastoid cell line
10
gastric cancer cell
10
mesenchymal stem cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right atrium auricular region
10
right lung
10
skeletal muscle satellite cell
10
spinal cord
10
substantia nigra
9
CD4-positive, alpha-beta memory T cell
MCF-7
9
Rhabdomyosarcoma
9
cardiomyocytes
9
caudate nucleus
9
diffuse intrinsic pontine glioma
9
erythroblast
9
liposarcoma
9
omental fat pad
9
osteoblast
9
retinal pigment epithelial cell
9
spleen
9
tibial artery
8
B-lymphoblastoid cell line
8
cerebellum
8
fibroblast cell line
8
frontal cortex
8
mast cell
8
neutrophil
8
renal pelvis
8
right kidney
8
skeletal muscle fiber
7
Ammon's horn
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
H9
7
T-helper 2 cell
7
amygdala
7
aorta
7
ascending aorta
7
body of pancreas
7
cardiac muscle cell
7
cardiomyocytes (cardiac muscle cell)
7
endothelial cell of umbilical vein
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast of cardiac tissue
7
glomerular visceral epithelial cell
7
left kidney
7
lymphocyte
7
mammary gland epithelial cell
7
mature neutrophil
7
memory B cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
pancreas
7
putamen
7
temporal lobe
6
Chondroid Chordoma
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
colon epithelial cell
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
left cardiac atrium
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
neuronal stem cell
6
nucleus accumbens
6
plasma cell
6
renal cortex interstitium
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
type I muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM19238
5
GM19239
5
GM19240
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Lymphatic Endothelial Cell
5
Medullary Thick Ascending Limb Cell
5
Monocyte
5
Myofibroblast
5
Non-Classical Monocyte
5
endothelial cell of lymphatic vessel
5
enterocyte
5
foreskin fibroblast
5
glutamatergic neuron
5
heart right ventricle
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mammary epithelial cell
5
mesangial cell
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
psoas muscle
5
smooth muscle cell of the coronary artery
5
testis
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
Life stage
1
embryonic
Date released
2
February, 2021
1
March, 2020
1
September, 2022
Software used
2
macs
1
chromhmm
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type_category!
DNase-seq
biosample_term_name!
MCF-7
uterus
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP