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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
6
ChIP-seq
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
stem cell
Biosample term
112
monocyte
55
HeLa-S3
50
H1-hESC
42
neural progenitor cell
39
islet of Langerhans
37
CD8-positive, alpha-beta T cell
27
endothelial cell
27
heart
26
K562
26
kidney
25
brain
25
liver
22
EndoC_BH1
22
stomach
21
A549
20
breast cancer cell
19
HFFc6
19
lung
19
macrophage
18
embryonic stem cell
18
epithelial cell of proximal tubule
18
placenta
17
fibroblast
17
hepatocyte
17
small intestine
adipose tissue
16
adrenal gland
16
pancreatic ductal cell
16
subcutaneous adipose tissue
15
glomerular endothelial cell
15
induced pluripotent stem cell
15
muscle of arm
15
muscle of leg
14
adipocyte
regulatory T cell
14
smooth muscle cell
14
thymus
13
B cell
13
large intestine
13
muscle of back
13
retina
12
common myeloid progenitor, CD34-positive
12
heart left ventricle
12
hematopoietic multipotent progenitor cell
12
keratinocyte
12
left lung
12
neuroblastoma cell
11
GM12878
11
HepG2
11
lymphoblastoid cell line
10
MCF-7
10
T-helper 1 cell
10
T-helper 17 cell
10
gastric cancer cell
10
progenitor cell of endocrine pancreas
10
right lung
10
spinal cord
10
substantia nigra
10
tibial nerve
9
CD4-positive, alpha-beta memory T cell
9
Rhabdomyosarcoma
9
T cell
9
cardiomyocytes
9
caudate nucleus
9
coronary artery
9
diffuse intrinsic pontine glioma
9
endothelial cell of hepatic sinusoid
9
liposarcoma
9
mesenchymal stem cell
9
pancreatic acinar cell
9
pancreatic delta cell
9
spleen
8
B-lymphoblastoid cell line
8
cerebellum
8
fibroblast cell line
8
frontal cortex
8
neutrophil
8
omental fat pad
8
renal pelvis
8
right atrium auricular region
8
right kidney
8
tibial artery
7
Ammon's horn
7
CD8-positive, alpha-beta memory T cell
7
H9
7
amygdala
7
aorta
7
ascending aorta
7
body of pancreas
7
cardiac muscle cell
7
cardiomyocytes (cardiac muscle cell)
7
endothelial cell of umbilical vein
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
left kidney
7
lymphocyte
7
mammary gland epithelial cell
7
mature neutrophil
7
natural killer cell
7
pancreas
7
pancreatic beta cell
7
pericyte cell
7
putamen
7
temporal lobe
6
CD4-positive, alpha-beta T cell
6
Chondroid Chordoma
6
T-helper 2 cell
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
fibroblast of cardiac tissue
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
left cardiac atrium
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
osteoblast
6
pancreatic alpha cell
6
pigmented layer of retina
6
renal cortex interstitium
6
retinal pigment epithelial cell
6
skeletal muscle myoblast
6
skeletal muscle tissue
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM19238
5
GM19239
5
GM19240
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Monocyte
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Proximal Tubule Epithelial Cell Segment 3
5
Renin-positive Juxtaglomerular Granular Cell
5
foreskin fibroblast
5
glomerular visceral epithelial cell
5
heart right ventricle
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mammary epithelial cell
5
osteosarcoma
5
pancreatic stellate cell
5
prostate cancer cell line
5
prostate gland
5
psoas muscle
5
skeletal muscle satellite cell
5
testis
5
type I muscle cell
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
Life stage
1
embryonic
Date released
2
February, 2021
1
March, 2020
1
September, 2022
Software used
2
macs
1
chromhmm
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type_category!
DNase-seq
biosample_term_name!
adipose tissue
regulatory T cell
files.file_type!
bigWig
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP