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Schema
Citing CMDGA
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Annotation type
2
chromatin state
1
eQTL
1
gene expression
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
8
ChIP-seq
DNase-seq
2
RNA-seq
Available data
2
bed bed9
1
tsv
File set status
4
released
Genome assembly (visualization)
3
GRCh38
2
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
4
vagina
Organ
752
epithelium
kidney
302
connective tissue
226
brain
225
pancreas
165
vasculature
139
musculature of body
130
bodily fluid
127
blood vessel
127
heart
125
blood
116
embryo
109
liver
105
intestine
100
lung
83
limb
82
skin of body
72
eye
66
uterus
60
large intestine
55
adipose tissue
50
artery
45
bone element
45
extraembryonic component
40
stomach
39
mammary gland
30
prostate gland
28
adrenal gland
26
small intestine
25
placenta
24
lymph node
22
penis
20
gonad
19
esophagus
17
lymphatic vessel
16
spinal cord
16
thymus
13
nerve
13
ureter
11
skeleton
11
spleen
11
testis
11
vein
10
bone marrow
9
bronchus
9
ovary
9
thyroid gland
8
lymphoid tissue
6
mouth
4
breast
4
trachea
4
urinary bladder
4
vagina
3
pituitary gland
3
tongue
1
nose
1
pericardium
Life stage
3
adult
Date released
2
September, 2022
1
January, 2022
1
March, 2024
Software used
2
chromhmm
1
qTLtools
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type_category!
DNase-seq
disease_term_name!
prostate cancer
organ_slims!
kidney
status!
archived
Showing 4 of 4 results
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Download
FileSet
DSR851YIE
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Vagina.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR065OYN
released
Annotation file set
: Chromatin states for BSS01887 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR213CWJ
released
Annotation file set
: Chromatin states for BSS01886 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR221QNR
released
Annotation file set
: vagina eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP