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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
caQTL
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
5
ATAC-seq
3
DNase-seq
H3K27ac ChIP-Seq
1
ChIP-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
in vitro differentiated cells
Biosample term
130
monocyte
90
heart
84
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
63
HeLa-S3
62
small intestine
61
A549
60
adrenal gland
59
placenta
57
muscle of leg
55
large intestine
54
muscle of back
53
H1-hESC
53
common myeloid progenitor, CD34-positive
52
left lung
51
neural progenitor cell
49
CD8-positive, alpha-beta T cell
48
liver
47
thymus
46
B cell
45
islet of Langerhans
45
right lung
44
endothelial cell
43
hematopoietic multipotent progenitor cell
42
right kidney
40
K562
40
renal cortex interstitium
40
renal pelvis
40
retina
37
hepatocyte
36
left kidney
35
fibroblast
34
heart left ventricle
34
macrophage
34
spinal cord
32
CD4-positive, alpha-beta memory T cell
32
spleen
30
adipose tissue
28
regulatory T cell
27
smooth muscle cell
25
MCF-7
25
adipocyte
25
natural killer cell
25
tibial nerve
24
pancreatic ductal cell
24
pericyte cell
23
EndoC_BH1
23
T-helper 1 cell
23
body of pancreas
23
epithelial cell of proximal tubule
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
caudate nucleus
22
foreskin keratinocyte
22
sigmoid colon
21
T-helper 17 cell
21
glomerular endothelial cell
21
pancreas
21
subcutaneous adipose tissue
20
breast cancer cell
20
keratinocyte
20
mononuclear cell
20
pigmented layer of retina
20
trophoblast cell
19
coronary artery
19
heart right ventricle
19
ovary
19
psoas muscle
19
right atrium auricular region
18
HFFc6
18
embryonic stem cell
18
endothelial cell of umbilical vein
18
foreskin fibroblast
18
mesenchymal stem cell
18
pancreatic beta cell
18
substantia nigra
18
tibial artery
17
T-helper 2 cell
17
gastrocnemius medialis
17
omental fat pad
17
pancreatic alpha cell
17
testis
17
thyroid gland
17
transverse colon
16
HepG2
16
astrocyte
16
cardiac muscle cell
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
layer of hippocampus
16
muscle of trunk
16
osteoblast
16
pancreatic acinar cell
16
retinal pigment epithelial cell
16
skeletal muscle tissue
16
upper lobe of left lung
15
CD14-positive monocyte
15
CD4-positive, alpha-beta T cell
15
ascending aorta
15
cerebellum
15
fibroblast of lung
15
frontal cortex
15
induced pluripotent stem cell
15
mammary gland epithelial cell
15
neutrophil
15
pancreatic delta cell
15
skeletal muscle myoblast
14
GM12878
14
endocrine pancreas
14
prostate gland
14
putamen
13
H9
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
excitatory neuron
13
neurosphere
13
skeletal muscle satellite cell
13
temporal lobe
12
Ammon's horn
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
naive thymus-derived CD4-positive, alpha-beta T cell
neuroblastoma cell
11
fibroblast of dermis
11
glomerular visceral epithelial cell
11
hepatic stellate cell
11
left cardiac atrium
11
left renal pelvis
11
mammary epithelial cell
11
neuronal stem cell
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
breast epithelium
10
choroid plexus epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
kidney tubule cell
10
lymphocyte
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
skin fibroblast
10
thoracic aorta
10
trophoblast
9
SK-N-DZ
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
erythroblast
9
esophagus
9
liposarcoma
9
parathyroid adenoma
9
tongue
8
GM12865
8
HEK293
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mast cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
skeletal muscle fiber
7
B-lymphoblastoid cell line
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
IMR-90
7
SK-N-MC
7
SK-N-SH
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
kidney glomerular epithelial cell
Date released
2
October, 2022
1
February, 2021
1
February, 2024
1
June, 2020
Software used
2
macs
2
matrix-eQTL
1
bedops
1
pepatac
Lab
3
Stephen S. Rich Lab @UVA
2
AMP-T2D consortium
Project
3
T1D
2
AMP
RFA
3
T1D
2
AMP
annotation_type_category!
H3K27ac ChIP-Seq
biosample_term_name!
neuroblastoma cell
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR204EGG
released
Annotation file set
: A canonical set of CD4+ T cell peaks
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR365EBN
released
Annotation file set
: Histone modifications annotation for Blood CD4+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR209TYC
released
Annotation file set
: Accessible chromatin annotation for Blood CD4+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP