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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
caQTL
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
5
ATAC-seq
3
DNase-seq
H3K27ac ChIP-Seq
1
ChIP-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
in vitro differentiated cells
Biosample term
115
monocyte
87
heart
83
stomach
74
kidney
72
brain
67
lung
67
muscle of arm
63
HeLa-S3
62
small intestine
61
A549
59
adrenal gland
59
placenta
57
muscle of leg
55
large intestine
54
muscle of back
53
common myeloid progenitor, CD34-positive
52
left lung
47
thymus
46
CD8-positive, alpha-beta T cell
46
liver
45
H1-hESC
45
right lung
44
neural progenitor cell
42
hematopoietic multipotent progenitor cell
42
right kidney
41
B cell
40
renal cortex interstitium
40
renal pelvis
38
retina
36
left kidney
34
islet of Langerhans
34
spinal cord
33
heart left ventricle
32
CD4-positive, alpha-beta memory T cell
32
endothelial cell
32
fibroblast
31
spleen
29
macrophage
28
adipose tissue
27
hepatocyte
25
MCF-7
24
smooth muscle cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
foreskin keratinocyte
22
pericyte cell
22
sigmoid colon
21
adipocyte
21
pancreas
21
regulatory T cell
20
breast cancer cell
20
keratinocyte
20
mononuclear cell
20
natural killer cell
20
pigmented layer of retina
20
trophoblast cell
19
psoas muscle
19
tibial nerve
18
HFFc6
18
endothelial cell of umbilical vein
18
foreskin fibroblast
18
heart right ventricle
18
mesenchymal stem cell
18
ovary
17
body of pancreas
17
embryonic stem cell
17
gastrocnemius medialis
17
thyroid gland
17
transverse colon
16
CD14-positive monocyte
16
HepG2
16
cardiac muscle cell
16
caudate nucleus
16
chorionic villus
16
fibroblast of cardiac tissue
16
layer of hippocampus
16
muscle of trunk
16
retinal pigment epithelial cell
16
testis
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
H9
15
T-helper 1 cell
15
fibroblast of lung
15
mammary gland epithelial cell
15
neutrophil
15
skeletal muscle myoblast
15
skeletal muscle tissue
14
EndoC_BH1
14
T-helper 17 cell
14
T-helper 2 cell
14
astrocyte
14
coronary artery
14
endocrine pancreas
14
pancreatic ductal cell
14
prostate gland
13
Peyer's patch
13
bronchial epithelial cell
13
neurosphere
13
osteoblast
13
pancreatic beta cell
13
right atrium auricular region
13
skeletal muscle satellite cell
13
tibial artery
12
aorta
12
excitatory neuron
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
neuroblastoma cell
11
endothelial cell of hepatic sinusoid
11
fibroblast of dermis
11
left renal pelvis
11
mammary epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
pancreatic acinar cell
11
pancreatic alpha cell
11
pancreatic delta cell
11
right renal pelvis
11
substantia nigra
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
breast epithelium
10
choroid plexus epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
kidney tubule cell
10
left cardiac atrium
10
lymphocyte
10
right renal cortex interstitium
10
skin fibroblast
10
subcutaneous adipose tissue
10
thoracic aorta
10
trophoblast
9
HEK293
9
SK-N-DZ
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
erythroblast
9
esophagus
9
hepatic stellate cell
9
liposarcoma
9
neuronal stem cell
9
omental fat pad
9
parathyroid adenoma
9
putamen
9
tongue
8
B-lymphoblastoid cell line
8
GM12865
8
ascending aorta
8
cerebellum
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
frontal cortex
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
skeletal muscle fiber
8
vagina
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
Ammon's horn
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
Caco-2 cell
7
GM12864
7
HT-29
7
IMR-90
7
SK-N-MC
7
SK-N-SH
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
glomerular endothelial cell
7
kidney glomerular epithelial cell
7
mature neutrophil
7
mesendoderm
7
renal cortical epithelial cell
7
stomach smooth muscle
6
Brodmann (1909) area 46
Organ
40
blood
bodily fluid
Date released
2
October, 2022
1
February, 2021
1
February, 2024
1
June, 2020
Software used
2
macs
2
matrix-eQTL
1
bedops
1
pepatac
Lab
3
Stephen S. Rich Lab @UVA
2
AMP-T2D consortium
Project
3
T1D
2
AMP
RFA
3
T1D
2
AMP
annotation_type_category!
H3K27ac ChIP-Seq
files.file_type!
tsv
organ_slims!
bodily fluid
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR204EGG
released
Annotation file set
: A canonical set of CD4+ T cell peaks
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR365EBN
released
Annotation file set
: Histone modifications annotation for Blood CD4+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR209TYC
released
Annotation file set
: Accessible chromatin annotation for Blood CD4+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP