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Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
candidate regulatory elements
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
ATAC-seq
H3K27ac ChIP-Seq
1
pCHi-C
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
stem cell
Biosample term
128
monocyte
54
HeLa-S3
49
H1-hESC
48
CD8-positive, alpha-beta T cell
43
islet of Langerhans
41
endothelial cell
39
neural progenitor cell
38
kidney
32
fibroblast
31
heart
30
macrophage
30
retina
29
hepatocyte
25
liver
24
brain
24
stomach
23
EndoC_BH1
23
pancreatic ductal cell
22
smooth muscle cell
21
K562
21
subcutaneous adipose tissue
20
breast cancer cell
20
epithelial cell of proximal tubule
20
lung
20
pigmented layer of retina
19
HFFc6
19
heart left ventricle
19
muscle of arm
19
pericyte cell
18
embryonic stem cell
17
B cell
17
adrenal gland
17
glomerular endothelial cell
17
muscle of leg
17
pancreatic beta cell
16
endothelial cell of hepatic sinusoid
16
pancreatic acinar cell
16
placenta
16
regulatory T cell
16
small intestine
15
CD4-positive, alpha-beta T cell
15
adipocyte
15
induced pluripotent stem cell
15
large intestine
15
muscle of back
15
pancreatic alpha cell
14
common myeloid progenitor, CD34-positive
14
keratinocyte
14
tibial nerve
13
T-helper 1 cell
13
astrocyte
13
cardiac muscle cell
13
coronary artery
13
excitatory neuron
13
left lung
13
renal cortex interstitium
12
H9
12
hematopoietic multipotent progenitor cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
pancreatic delta cell
12
renal pelvis
12
spleen
12
substantia nigra
12
thymus
11
GM12878
11
T-helper 17 cell
11
adipose tissue
11
caudate nucleus
11
endothelial cell of umbilical vein
11
lymphoblastoid cell line
11
omental fat pad
11
pancreas
11
retinal pigment epithelial cell
11
right atrium auricular region
10
T cell
10
body of pancreas
10
gastric cancer cell
10
mammary epithelial cell
10
natural killer cell
10
osteoblast
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
putamen
10
right kidney
10
right lung
10
skeletal muscle satellite cell
10
spinal cord
10
tibial artery
9
MCF-7
9
Rhabdomyosarcoma
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
erythroblast
9
foreskin fibroblast
9
heart right ventricle
9
liposarcoma
9
mesenchymal stem cell
8
Ammon's horn
8
B-lymphoblastoid cell line
8
HepG2
8
ascending aorta
8
fibroblast cell line
8
frontal cortex
8
left cardiac atrium
8
neuronal stem cell
8
neutrophil
8
skeletal muscle fiber
8
skeletal muscle myoblast
8
testis
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
cerebellum
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
foreskin keratinocyte
7
glomerular visceral epithelial cell
7
mature neutrophil
7
memory B cell
7
temporal lobe
6
A549
6
Chondroid Chordoma
6
anterior cingulate cortex
6
aorta
6
bronchial epithelial cell
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
hESC cell
6
hepatic stellate cell
6
hypothalamus
6
iPSC derived cell line
6
left kidney
6
lymphocyte
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
ovary
6
plasma cell
6
type I muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HEK293
5
HUES8
5
Lymphatic Endothelial Cell
5
Medullary Thick Ascending Limb Cell
5
Natural Killer T Cell
5
Non-Classical Monocyte
5
T-helper 2 cell
5
enterocyte
5
fibroblast of cardiac tissue
5
glutamatergic neuron
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mammary gland epithelial cell
5
mast cell
5
mesangial cell
5
osteosarcoma
5
prostate cancer cell line
5
right lobe of liver
5
smooth muscle cell of the coronary artery
4
22Rv1
4
CD14-positive monocyte
4
CD4-positive helper T cell
4
GM06990
4
GM12864
4
GM12865
4
GM12873
Life stage
1
embryonic
Date released
3
February, 2021
September, 2022
June, 2020
1
March, 2020
Software used
2
macs
1
encode-ccres
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type_category!
H3K27ac ChIP-Seq
biosample_term_name!
SK-N-SH
month_released!
June, 2020
September, 2022
Showing 4 of 4 results
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Download
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP