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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
16
hg19
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
65
stomach
62
heart
51
brain
50
lung
50
muscle of arm
49
kidney
47
small intestine
46
CD8-positive, alpha-beta T cell
46
adrenal gland
45
placenta
44
A549
43
large intestine
42
muscle of leg
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
37
thymus
35
liver
34
retina
34
right lung
32
hematopoietic multipotent progenitor cell
31
B cell
30
renal cortex interstitium
30
renal pelvis
30
right kidney
27
CD14-positive monocyte
27
left kidney
27
spinal cord
24
spleen
23
CD4-positive, alpha-beta memory T cell
22
adipocyte
22
adipose tissue
21
MCF-7
20
breast cancer cell
20
islet of Langerhans
20
pigmented layer of retina
19
K562
19
heart left ventricle
18
foreskin keratinocyte
17
foreskin fibroblast
17
sigmoid colon
17
trophoblast cell
16
embryonic stem cell
16
natural killer cell
16
neural progenitor cell
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
keratinocyte
15
mesenchymal stem cell
15
ovary
14
gastrocnemius medialis
14
monocyte
14
mononuclear cell
14
psoas muscle
14
transverse colon
13
CD4-positive, alpha-beta T cell
13
body of pancreas
13
cardiac muscle cell
13
pancreas
13
thyroid gland
13
upper lobe of left lung
12
T cell
12
endothelial cell
12
endothelial cell of umbilical vein
12
fibroblast of lung
12
layer of hippocampus
12
mammary epithelial cell
12
muscle of trunk
12
neuroblastoma cell
12
neutrophil
12
retinal pigment epithelial cell
12
skeletal muscle tissue
12
testis
12
tibial nerve
11
T-helper 1 cell
11
chorionic villus
11
heart right ventricle
11
osteoblast
11
skeletal muscle myoblast
10
EndoC_BH1
10
HeLa-S3
10
HepG2
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
caudate nucleus
10
endocrine pancreas
10
fibroblast of cardiac tissue
10
gastric cancer cell
10
macrophage
10
mammary gland epithelial cell
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
neuronal stem cell
10
prostate gland
9
GM12878
9
H9
9
T-helper 2 cell
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
fibroblast of dermis
9
liposarcoma
9
neurosphere
9
smooth muscle cell
8
22Rv1
8
B-lymphoblastoid cell line
8
H1-hESC
8
HEK293
8
IMR-90
8
breast epithelium
8
fibroblast
8
fibroblast cell line
8
hepatocyte
8
pituitary stalk
8
right renal pelvis
8
temporal lobe
8
trophoblast
7
GM06990
7
GM12864
7
GM12865
7
HAP-1
7
HL-60
7
HT-29
7
Jurkat
7
T-helper 17 cell
7
aorta
7
colonic mucosa
7
coronary artery
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
left renal cortex interstitium
7
left renal pelvis
7
lower leg skin
7
mature neutrophil
7
mesendoderm
7
pancreatic beta cell
7
pancreatic ductal cell
7
substantia nigra
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19240
6
GM23248
6
KARPAS-422 cell
6
LNCAP
6
LoVo cell
6
MG63
6
NAMALWA cell
6
SK-N-MC
6
chondrocyte
6
choroid plexus epithelial cell
6
cingulate gyrus
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
fibroblast of pulmonary artery
6
hESC cell
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
6
omental fat pad
6
pancreatic delta cell
6
parathyroid adenoma
6
skeletal muscle satellite cell
6
skin fibroblast
6
thoracic aorta
6
tibial artery
6
tongue
5
Ammon's horn
5
CD14-positive, CD16-negative classical monocyte
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
H7-hESC
5
HCT-116 cell
5
HUES6
5
HuH-7
5
LHCN-M2
5
OCI-LY7
5
PC-9
5
SGBS preadipocytes
5
SJSA1
5
SK-N-DZ
5
SK-N-SH
5
SW480
5
WERI-Rb-1
Life stage
3
unknown
Date released
2
February, 2021
2
September, 2022
1
May, 2021
Software used
2
r
1
abc
1
encode-ccres
1
macs
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
annotation_type_category!
HiC
assembly!
GRCh38
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR223CRF
released
Annotation file set
: Candidate regulatory elements for BSS00089 astrocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR903FVP
released
Annotation file set
: Target gene predictions for BSS00089 astrocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR488ZSW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE astrocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR720CZQ
released
Annotation file set
: Histone modifications annotation for Neural Astrocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR031ZTG
released
Annotation file set
: enhancer-gene predicton of astrocyte-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP