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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
histone modifications
1
target gene predictions
Annotation Category
5
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
6
cell line
Biosample term
131
monocyte
62
A549
54
common myeloid progenitor, CD34-positive
51
CD8-positive, alpha-beta T cell
51
neural progenitor cell
44
B cell
43
hematopoietic multipotent progenitor cell
40
endothelial cell
37
hepatocyte
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
32
macrophage
31
CD14-positive monocyte
28
regulatory T cell
26
MCF-7
26
adipocyte
25
K562
25
smooth muscle cell
23
T-helper 1 cell
23
epithelial cell of proximal tubule
23
natural killer cell
23
pancreatic ductal cell
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
EndoC_BH1
22
T cell
22
foreskin keratinocyte
22
pericyte cell
21
T-helper 17 cell
21
glomerular endothelial cell
21
keratinocyte
20
breast cancer cell
20
mononuclear cell
19
foreskin fibroblast
19
mesenchymal stem cell
18
embryonic stem cell
18
endothelial cell of umbilical vein
18
pancreatic beta cell
17
H1-hESC
17
HepG2
17
T-helper 2 cell
17
astrocyte
17
cardiac muscle cell
17
osteoblast
17
pancreatic alpha cell
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
induced pluripotent stem cell
16
pancreatic acinar cell
16
retinal pigment epithelial cell
16
skeletal muscle myoblast
15
CD4-positive, alpha-beta T cell
15
mammary gland epithelial cell
15
neutrophil
15
pancreatic delta cell
13
HeLa-S3
bronchial epithelial cell
13
excitatory neuron
13
neurosphere
13
skeletal muscle satellite cell
12
fibroblast of dermis
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
11
epithelial cell of prostate
11
erythroblast
11
glomerular visceral epithelial cell
10
22Rv1
10
GM12878
10
H9
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
gastric cancer cell
10
hepatic stellate cell
10
kidney tubule cell
10
neuronal stem cell
10
progenitor cell of endocrine pancreas
10
skin fibroblast
9
HEK293
9
IMR-90
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
liposarcoma
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
HAP-1
8
HT-29
8
NAMALWA cell
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
endodermal cell
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19240
7
GM23248
7
HL-60
7
Jurkat
7
KARPAS-422 cell
7
LNCaP clone FGC
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
kidney glomerular epithelial cell
7
mature neutrophil
7
memory B cell
7
renal cortical epithelial cell
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12891
6
GM12892
6
GM19238
6
GM19239
6
H7-hESC
6
HUES6
6
HuH-7
6
LNCAP
6
LoVo cell
6
MM.1S
6
OCI-LY7
6
PC-9
6
SJSA1
6
SW480
6
WI38
6
chondrocyte
6
fibroblast of breast
6
fibroblast of mammary gland
6
fibroblast of villous mesenchyme
6
hESC cell
6
mesodermal cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
pancreatic stellate cell
6
plasma cell
6
smooth muscle cell of the coronary artery
6
type I muscle cell
5
cardiac fibroblast
5
A172
5
A673
5
ACHN
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Caki2
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
Organ
6
prostate gland
Life stage
2
adult
Date released
4
February, 2021
1
June, 2020
1
May, 2021
Software used
3
macs
2
encode-ccres
1
abc
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
annotation_type_category!
HiC
biosample_term_name!
bronchial epithelial cell
biosample_type!
tissue
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR718TWX
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE LNCAP
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR543HLI
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE LNCAP
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR835IJD
released
Annotation file set
: Histone modifications annotation for Prostate LNCAP from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR144WDI
released
Annotation file set
: Binding sites annotation for Prostate LNCAP from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR563FIF
released
Annotation file set
: enhancer-gene predicton of LNCAP from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR475PYM
released
Annotation file set
: Accessible chromatin annotation for Prostate LNCAP from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP