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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
1
eQTL
1
variant allelic effects
Annotation Category
2
Genetic variant effects
2
Target gene links
2
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
DNase-seq
2
snATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
Available data
5
bed bed3+
1
bigWig
File set status
6
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
6
Homo sapiens
Biosample type
3
primary cell
3
tissue
Biosample term
3
thyroid follicular cell
3
thyroid gland
Organ
561
epithelium
369
kidney
313
connective tissue
287
musculature of body
259
brain
226
lung
211
embryo
183
heart
182
pancreas
175
intestine
173
limb
146
extraembryonic component
145
skin of body
141
bodily fluid
140
vasculature
139
blood
98
large intestine
97
blood vessel
77
stomach
75
liver
73
placenta
66
eye
64
penis
64
ureter
64
uterus
60
small intestine
57
bone element
49
thymus
48
adrenal gland
48
lymph node
39
artery
39
mammary gland
38
spinal cord
34
prostate gland
28
gonad
22
vein
21
adipose tissue
18
skeleton
17
testis
16
bronchus
16
esophagus
16
lymphatic vessel
14
mouth
14
spleen
13
bone marrow
12
pituitary gland
10
lymphoid tissue
10
ovary
9
tongue
6
thyroid gland
5
trachea
5
urinary bladder
4
nerve
3
breast
1
nose
1
pericardium
1
vagina
Life stage
adult
Date released
2
November, 2021
1
February, 2024
1
January, 2022
1
June, 2020
1
May, 2021
Software used
2
abc
2
macs
1
deltasvm
1
qTLtools
Lab
3
Bing Ren, UCSD
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
2
ENCODE
RFA
4
AMP
2
ENCODE3
annotation_type_category!
RNA microarray
biosample_term_name!
prostate gland
relevant_life_stage!
adult
Showing 6 of 6 results
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Download
FileSet
DSR782PKI
released
Annotation file set
: thyroid eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR121IWB
released
Annotation file set
: Target gene predictions of Thyroid Follicular Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR356XOM
released
Annotation file set
: Accessible chromatin annotation of Thyroid Follicular Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR632XJX
released
Annotation file set
: enhancer-gene predicton of thyroid_gland-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR447YDG
released
Annotation file set
: Variant allelic effects annotation of Follicular cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR292QNC
released
Annotation file set
: Accessible chromatin annotation for Others Thyroid Gland from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP