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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
candidate regulatory elements
1
gene expression
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
2
snATAC-seq
RNA-seq
1
snRNA-seq
Available data
5
bed bed3+
1
bigWig
File set status
6
released
Genome assembly (visualization)
12
hg19
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
65
stomach
64
heart
51
brain
50
lung
50
muscle of arm
48
kidney
47
CD8-positive, alpha-beta T cell
47
small intestine
46
adrenal gland
45
placenta
44
A549
43
large intestine
42
muscle of leg
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
37
thymus
34
liver
34
retina
34
right lung
32
hematopoietic multipotent progenitor cell
31
B cell
31
right kidney
30
renal cortex interstitium
30
renal pelvis
27
CD14-positive monocyte
27
left kidney
27
spinal cord
24
spleen
23
CD4-positive, alpha-beta memory T cell
22
adipocyte
21
MCF-7
20
adipose tissue
20
breast cancer cell
20
epithelial cell of proximal tubule
20
heart left ventricle
20
pigmented layer of retina
19
K562
19
natural killer cell
18
foreskin keratinocyte
18
glomerular endothelial cell
17
embryonic stem cell
17
endothelial cell
17
foreskin fibroblast
17
neural progenitor cell
17
sigmoid colon
17
trophoblast cell
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
keratinocyte
15
ovary
15
psoas muscle
14
endothelial cell of umbilical vein
14
gastrocnemius medialis
14
mesenchymal stem cell
14
monocyte
14
mononuclear cell
14
transverse colon
13
CD4-positive, alpha-beta T cell
13
cardiac muscle cell
13
heart right ventricle
13
thyroid gland
13
upper lobe of left lung
12
T cell
12
fibroblast of lung
12
layer of hippocampus
12
mammary epithelial cell
12
muscle of trunk
12
neuroblastoma cell
12
retinal pigment epithelial cell
12
skeletal muscle myoblast
12
testis
12
tibial nerve
11
T-helper 1 cell
11
caudate nucleus
11
chorionic villus
11
hepatocyte
11
macrophage
11
osteoblast
10
HeLa-S3
10
HepG2
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
fibroblast of cardiac tissue
10
gastric cancer cell
10
mammary gland epithelial cell
10
neuronal stem cell
10
progenitor cell of endocrine pancreas
10
prostate gland
10
skeletal muscle tissue
9
GM12878
9
H9
9
T-helper 17 cell
9
T-helper 2 cell
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
fibroblast of dermis
9
liposarcoma
9
neurosphere
9
neutrophil
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
aorta
8
breast epithelium
8
fibroblast
8
fibroblast cell line
8
left renal cortex interstitium
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
pituitary stalk
8
right renal pelvis
8
smooth muscle cell
8
temporal lobe
8
trophoblast
7
GM06990
7
GM12864
7
GM12865
7
H1-hESC
7
HAP-1
7
HT-29
7
IMR-90
7
Jurkat
7
colonic mucosa
7
coronary artery
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
glomerular visceral epithelial cell
7
left renal pelvis
7
lower leg skin
7
mature neutrophil
7
mesendoderm
7
substantia nigra
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
KARPAS-422 cell
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
chondrocyte
6
choroid plexus epithelial cell
6
cingulate gyrus
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
fibroblast of pulmonary artery
6
hESC cell
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
6
omental fat pad
6
parathyroid adenoma
6
right renal cortex interstitium
6
skeletal muscle satellite cell
6
skin fibroblast
6
thoracic aorta
6
tibial artery
6
tongue
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Ammon's horn
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Daoy
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
Organ
6
musculature of body
Life stage
3
adult
1
unknown
Date released
2
February, 2024
2
September, 2022
1
February, 2021
1
May, 2022
Software used
3
r
2
macs
1
deeptools
1
encode-ccres
1
samtools
1
umitools
Lab
4
AMP-T2D consortium
2
Stephen Parker, UMich
Project
6
AMP
RFA
4
AMP
2
AMP2
annotation_type_category!
RNA-seq
assembly!
GRCh38
organ_slims!
pancreas
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR972CPB
released
Annotation file set
: Candidate regulatory elements for BSS01576 skeletal muscle satellite cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR326ORZ
released
Annotation file set
: Target gene predictions for BSS01576 skeletal muscle satellite cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR534XMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of skeletal muscle satellite cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR650BYN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE skeletal muscle satellite cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR724QWN
released
Annotation file set
: Cell type chromatin broad peaks and bw of skeletal muscle satellite cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR919OZT
released
Annotation file set
: Cell type gene expression mean TPM and bw of skeletal muscle satellite cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP