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Annotation type
1
variant allelic effects
Annotation Category
1
Genetic variant effects
Annotation type Category
1
SNP-SELEX
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Biosample term
1
purified protein and synthetic DNA oligo binding assay
Date released
1
February, 2023
Software used
2541
macs
2101
r
1030
chromhmm
833
encode-ccres
249
abc
136
deltasvm
117
deseq2
32
cicero
27
chicago
27
nospecificsoft_customcode
25
seurat
18
samtools
14
hiccups
12
deeptools
12
umitools
11
rasqual
9
limix
6
eigenmt
3
minfi
2
combined S2G strategy
2
fastqtl
2
matrix-eQTL
2
mpraflow
2
peer
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Lab
1
Kyle Gaulton, UCSD
Project
1
T1D
RFA
1
T1D
annotation_type_category!
RNA-seq
biosample_term_name!
foreskin fibroblast
disease_term_name!
pancreatic ductal adenocarcinoma
Showing 1 of 1 results
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FileSet
DSR976GBT
released
Annotation file set
: High-throughput analysis of the binding of human transcription factors to common sequence variants by SNP-SELEX (in-silico assay)
Lab:
Kyle Gaulton, UCSD
Project:
T1D