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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
RNA-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
in vitro differentiated cells
Biosample term
87
monocyte
57
A549
40
common myeloid progenitor, CD34-positive
35
hematopoietic multipotent progenitor cell
24
adrenal gland
23
B cell
22
liver
21
adipose tissue
21
retina
21
stomach
20
pigmented layer of retina
19
CD8-positive, alpha-beta T cell
19
K562
19
MCF-7
19
spleen
16
body of pancreas
16
gastrocnemius medialis
16
sigmoid colon
16
thyroid gland
16
transverse colon
15
CD8-positive, alpha-beta memory T cell
15
epithelial cell of proximal tubule
15
mononuclear cell
15
tibial nerve
14
heart left ventricle
14
natural killer cell
14
pancreas
13
Peyer's patch
13
caudate nucleus
13
glomerular endothelial cell
13
upper lobe of left lung
12
CD14-positive monocyte
12
endocrine pancreas
12
layer of hippocampus
12
ovary
12
psoas muscle
11
HeLa-S3
11
aorta
11
omental fat pad
11
temporal lobe
10
T cell
10
angular gyrus
10
ascending aorta
10
endothelial cell of hepatic sinusoid
10
esophagus squamous epithelium
10
lower leg skin
9
CD4-positive, alpha-beta memory T cell
9
breast epithelium
9
coronary artery
9
endometrium adenocarcinoma
9
esophagus muscularis mucosa
9
immortal human breast epithelial cell line cell
9
kidney
9
parathyroid adenoma
9
substantia nigra
9
thoracic aorta
9
tibial artery
8
CD4-positive, alpha-beta T cell
8
T-helper 1 cell
8
cerebellum
8
cingulate gyrus
8
colonic mucosa
8
duodenal mucosa
8
endothelial cell
8
esophagus
8
fibroblast of breast
8
hepatocyte
8
kidney tubule cell
8
mucosa of rectum
8
muscle layer of colon
8
muscle layer of duodenum
8
myoepithelial cell of mammary gland
8
prostate gland
8
right atrium auricular region
8
skeletal muscle tissue
8
small intestine
8
stomach smooth muscle
8
testis
8
vagina
7
LNCaP clone FGC
7
T-helper 2 cell
7
T47D
7
frontal cortex
7
gastroesophageal sphincter
7
islet of Langerhans
7
kidney loop of Henle thin ascending limb epithelial cell
7
regulatory T cell
6
Brodmann (1909) area 46
6
globus pallidus
6
hepatic stellate cell
6
kidney glomerular epithelial cell
6
mammary gland epithelial cell
6
middle frontal gyrus
6
muscle cell
naive T cell
6
putamen
6
right cardiac atrium
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Ammon's horn
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
GM12878
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
cerebellar cortex
5
dermis blood vessel endothelial cell
5
fibroblast of lung
5
heart right ventricle
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung
5
mature neutrophil
5
medulla oblongata
5
mesenchymal stem cell
5
midbrain
5
pancreatic alpha cell
5
pancreatic beta cell
5
pons
5
skeletal muscle satellite cell
5
subcutaneous abdominal adipose tissue
5
superior temporal gyrus
5
uterus
4
A172
4
ACC112
4
ACHN
4
C4-2B
4
Caki2
4
DOHH2
4
GM04503
4
GM04504
4
GM23248
4
GM23338
4
H4
4
H54
4
HAP-1
4
HCT116
4
HL-60
4
HS-27A
4
HS-5
4
HT-29
4
HT1080
4
KBM-7
4
KMS-11
4
LHCN-M2
4
Loucy
4
M059J
4
MM.1S
4
NB4
4
NCI-H929
Organ
4
connective tissue
Life stage
4
adult
4
unknown
Date released
3
September, 2022
1
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type_category!
RNA-seq
biosample_term_name!
naive T cell
progenitor cell of endocrine pancreas
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR148SNR
released
Annotation file set
: Chromatin states for BSS00039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP